Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30570.Seq
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    30   0.36 
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    28   1.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   3.4  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   4.5  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    26   4.5  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    26   4.5  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   5.9  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   5.9  
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.9  

>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +2

Query: 11  IVFYIILVVQARTLIP*INMADQNQQAGDTGPPKGIPALKAHIIANKID 157
           I FY+     AR +I      +  Q+ G  GP KG  A+K H I  +ID
Sbjct: 308 IPFYV--TSDARDIINKFLKKNPKQRLGADGPEKGYDAIKKHRIYRRID 354


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = +3

Query: 312 DLPLAGFHGEVLPGGQRSLFILFTHFHERRAQFVNIGANLFICAATRRFVFLDY 473
           DL +     E+L  G   L I  T F E R+ F     N  +CAA R+FV +DY
Sbjct: 114 DLGIKDIASEMLEMGSHYLSI--TAFIESRSHFEYGFVNHALCAALRKFV-MDY 164


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 696  PTATSHVHRS*LVIRTGLHQAXSDRNNAHDE 604
            P   + +H S L +R  +HQ  SD   AH +
Sbjct: 1742 PQLIARIHASSLSVRKSVHQLLSDVGRAHPQ 1772


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 388 FMNVVPNLLILVPIFLFALLHAASYSLTIL 477
           F+ V+PN+ +L+P F+   +  + Y L  +
Sbjct: 103 FLTVIPNIAVLIPCFIAYKITDSHYLLVAI 132


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -3

Query: 250 FVECRHWIVKQWEHVSNGTQHGDYADPPKSYVY--FIGNDV 134
           +VE R+ ++   EHV +  Q+ DY++   S +Y  F+  DV
Sbjct: 493 WVEARNAMLMAQEHVFDIMQNSDYSEFVNSEIYYRFLAQDV 533


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 316 SLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLL 414
           S S++ +A FF+ D   YLFY+L F+  VP ++
Sbjct: 437 SPSKEILA-FFI-DQTWYLFYALFFICNVPRVI 467


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 157 RSSLGGPRNHRAVYHWIR 210
           R  LG  R HRA  HWI+
Sbjct: 363 RDLLGDERVHRAAMHWIK 380


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 632 AVTGTMPMMSYDPGNSHESRRAPAAPEDVPRLELDQGDE 516
           A++ + P +    GNS    +      D PRL +D  D+
Sbjct: 135 AMSSSAPTVDVSEGNSAAEPKITPDDSDTPRLNVDMNDK 173


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +2

Query: 146 NKIDVALWGVRVITVLCTIGYVFPLFNNPVSAFYKAYSRTLRLQRCGYIKEFQ 304
           N+I  A W +  ++   T  + FP  +  + AF +     +R QR   +++ Q
Sbjct: 94  NRIAPARWLITSLSTAATFMFCFPKTSKNIGAFVEKRFPAIRKQRMLVLEQTQ 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,180
Number of Sequences: 5004
Number of extensions: 62444
Number of successful extensions: 189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)