Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30570.Seq
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)                       30   1.6  
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)          30   1.6  
SB_57600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_14512| Best HMM Match : IncA (HMM E-Value=0.12)                     29   4.8  
SB_58663| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)               28   8.3  

>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
          Length = 323

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
 Frame = +3

Query: 207 TCSHCLTIQCRHSTK-----RTRERCDFSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLF 371
           TC HC  I  R+ST       T      +AAA+S +SS+       +H   L    ++L+
Sbjct: 165 TCQHCWRILARNSTVIIIIIITSSSSSSAAAASSSSSSSSSSSHHHYHRHHLHHHHKALY 224

Query: 372 ILFTHFHERRAQ--FVNIGANLFICA 443
            L  H     AQ  + N G+ L  CA
Sbjct: 225 KLRQHTPTLLAQQCWRNTGSELGRCA 250


>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
          Length = 1214

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 695 RPLLPTFTEVS*LYEPDFIKPAVTGTMPMMSYDPGN 588
           R  +P  TE+S +Y+ +  + +V GT PM    PGN
Sbjct: 839 RSSMPLKTEISSMYDAEPKRRSVPGTYPMKPRTPGN 874


>SB_57600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -2

Query: 695 RPLLP-TFTEVS*LYEPDFIKPAVTGTMPMMSYDPGNSHESRRA---PAAPEDVPRLELD 528
           R + P T+ E+  L E  FI+P      P +SYD   SHE          PE +  L+ D
Sbjct: 89  RSITPRTYEEIRDLGEAGFIEPKPVARGPDISYDGSISHEQEALGGDALLPEVMEMLDPD 148

Query: 527 Q 525
           Q
Sbjct: 149 Q 149


>SB_14512| Best HMM Match : IncA (HMM E-Value=0.12)
          Length = 642

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -2

Query: 599 DPGNSHESRRAPAAPEDVPRL----ELDQGDEQTTTHNEF*PRVSRIVKEYEAACSSANK 432
           D  N+ ES R  A   +  RL    EL++ + +         R+  I KEY    ++   
Sbjct: 152 DDPNTSESSRQEARERNEERLSEIDELERENRELENQKPLRERIKAIFKEYGFTVTAIGL 211

Query: 431 KIGTNINKLGTTFMK 387
            +GT +  +G +  K
Sbjct: 212 AVGTTMRAIGRSLGK 226


>SB_58663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -2

Query: 584 HESRRAPAAPEDVPRLELDQGDEQTTTHNEF*PRVSRIVKEYEAACSSANKKIGT 420
           HE  RA    E++ +L  D   +Q   + +   + +++ +EYE   ++  KK+ T
Sbjct: 241 HEKHRAKQMEEELEQLRQDFSTKQKNLYEDTTKKQTQVRQEYEMERAAWKKKLET 295


>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
          Length = 865

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = -3

Query: 595 RETATNLGERPRPRRMFRDWNSTREMSRRPPTTNFDQEYQG*SRNTKRRVAAQIKRLAP 419
           R  + +  ++P+P    R  +S R  S+   T+N     +G S + +R+ A++ K ++P
Sbjct: 156 RSRSKSRDKKPKPESPSRGRSSRRSRSQERGTSNRSPSPRGRSHSDERKRASKEKSVSP 214


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,432,263
Number of Sequences: 59808
Number of extensions: 497032
Number of successful extensions: 1600
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1598
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)