Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30568.Seq
(522 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 119 2e-27
11_01_0155 - 1287003-1287452 119 2e-27
07_03_0227 - 15398371-15398925 30 0.98
11_06_0598 - 25391923-25393197 28 5.2
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 27 6.9
11_04_0272 - 15631598-15631898,15633162-15633291,15636394-156365... 27 9.1
03_06_0097 - 31632238-31632525,31633386-31633769 27 9.1
>12_01_0152 - 1168928-1169377
Length = 149
Score = 119 bits (286), Expect = 2e-27
Identities = 55/74 (74%), Positives = 63/74 (85%)
Frame = +2
Query: 224 QGWWSCSTSLPIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 403
+G S IRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKF
Sbjct: 76 RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135
Query: 404 GGPGARARYQKSYR 445
GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149
Score = 92.3 bits (219), Expect = 2e-19
Identities = 38/73 (52%), Positives = 55/73 (75%)
Frame = +3
Query: 36 VQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIR 215
VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F + +R
Sbjct: 13 VQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMR 72
Query: 216 VTVKGGGHVAQVY 254
+ V+GGG +Q+Y
Sbjct: 73 IRVRGGGKTSQIY 85
>11_01_0155 - 1287003-1287452
Length = 149
Score = 119 bits (286), Expect = 2e-27
Identities = 55/74 (74%), Positives = 63/74 (85%)
Frame = +2
Query: 224 QGWWSCSTSLPIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 403
+G S IRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKF
Sbjct: 76 RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135
Query: 404 GGPGARARYQKSYR 445
GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149
Score = 92.3 bits (219), Expect = 2e-19
Identities = 38/73 (52%), Positives = 55/73 (75%)
Frame = +3
Query: 36 VQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIR 215
VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F + +R
Sbjct: 13 VQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMR 72
Query: 216 VTVKGGGHVAQVY 254
+ V+GGG +Q+Y
Sbjct: 73 IRVRGGGKTSQIY 85
>07_03_0227 - 15398371-15398925
Length = 184
Score = 30.3 bits (65), Expect = 0.98
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -1
Query: 168 VPEVCTAAVWXQPSPMGARLHAAFH--DHACNTQLRWRF 58
+P +C A W P+ A H FH C+ + RW +
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61
>11_06_0598 - 25391923-25393197
Length = 424
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -1
Query: 426 LARAPGPPNFLGSQRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAF 274
LA PP L S TS L + T + ++ S+TY AIR F
Sbjct: 254 LATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVF 304
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 122 WAPVYTQHSMTTLAIRNCGGGFLTSEYLD 36
W V T H +T +A R+C G F ++LD
Sbjct: 18 WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45
>11_04_0272 -
15631598-15631898,15633162-15633291,15636394-15636544,
15636632-15636730,15636912-15637063,15637079-15637301
Length = 351
Score = 27.1 bits (57), Expect = 9.1
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Frame = +2
Query: 212 QSDSQGWWSC-STSLPIRQAISKALI--AFYQKYVDEASKKEIKDI--LVQYDRSLLVAD 376
QS + WW S R +I+ L AFY+KY E+ K+ K+ L Q + + +
Sbjct: 24 QSSAFEWWDAHKKSYSERISITWELFKEAFYKKYFPESVKRMKKEFLELKQVEYEIEFSR 83
Query: 377 PRRCEPKKFGGPGARA-RYQKSYR*AFKKTI 466
R P+ G++A R++ R K+ +
Sbjct: 84 LARFAPEFVQTDGSKARRFESGLRQPLKRRV 114
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +3
Query: 30 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLV---XPRLLQYKLQEPILLLGKEKFS 200
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 201 MVXIRVTVKGGG 236
+ V V GGG
Sbjct: 153 SYDVFVKVHGGG 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,094,359
Number of Sequences: 37544
Number of extensions: 330647
Number of successful extensions: 771
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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