Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30563.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0452 - 18038182-18038253,18038338-18038415,18038502-180385... 31 1.2
08_01_0091 + 664913-664985,665281-665576,667197-667311,667901-66... 30 2.0
06_01_1202 + 10389090-10389140,10389218-10389853,10390355-103904... 29 2.7
11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595 29 3.5
09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818 29 3.5
05_05_0153 - 22766805-22767023,22767662-22767940,22768294-227684... 29 3.5
01_06_1238 + 35646647-35646932,35647333-35647950,35648732-356490... 29 4.7
07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616... 28 6.2
08_02_0646 + 19676133-19677581 28 8.2
07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305 28 8.2
>10_08_0452 -
18038182-18038253,18038338-18038415,18038502-18038579,
18039112-18039168,18039276-18039349,18039424-18039495,
18039609-18039670,18039861-18039962,18040378-18040490,
18040809-18040940,18041156-18041243,18041617-18041711,
18041793-18042023,18042567-18042680,18042765-18042866,
18043091-18043207,18043301-18044146
Length = 810
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 187 RSS*CVKSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKET-QNVKSQDXKS 363
RSS KS GEG + E + + + K +P P K T+ + K + + V+ + +S
Sbjct: 73 RSSSPTKSNSPGEGKRSESVAAGAKPEAKEKPSPKKPKTLGAKSDTKSSAEGVEKEKRRS 132
Query: 364 GEQQKGKGPA 393
K K A
Sbjct: 133 PSPTKAKALA 142
>08_01_0091 +
664913-664985,665281-665576,667197-667311,667901-667971
Length = 184
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +1
Query: 112 QEDHNGEFLRCGSSEQIRSFLGR*DRSS*CVKSA--RAGEGAQKEDQRSRKENKGKPEPK 285
Q+ G FL G E+ RS + + SA R GE A+ +D+ +R +GK
Sbjct: 20 QKAEKGNFLEVGEEERSRSEARMGRKRKELLSSAPWRTGEAAEDDDEAARLSREGKVSVT 79
Query: 286 PAKGVTVPT 312
G T PT
Sbjct: 80 SNPGET-PT 87
>06_01_1202 +
10389090-10389140,10389218-10389853,10390355-10390439,
10390536-10390654,10391251-10391318,10391401-10391710
Length = 422
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 220 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ 336
G+G K+D++ K+ K K +P P T P K K +
Sbjct: 355 GKGKGKKDEKEDKDKKIKRKPSPTVQATTPPAKRRKNNE 393
>11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595
Length = 216
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 220 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ 336
G+G K+D++ K+ K K +P P T P K K +
Sbjct: 148 GKGKGKKDEKEDKDKKIKRKPSPIVQATTPPAKRRKNNE 186
>09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818
Length = 216
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 220 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ 336
G+G K+D++ K+ K K +P P T P K K +
Sbjct: 148 GKGKGKKDEKEDKDKKIKRKPSPIVQATTPPAKRRKNNE 186
>05_05_0153 -
22766805-22767023,22767662-22767940,22768294-22768401,
22768500-22768779,22768871-22769174,22769367-22769975,
22770186-22770411
Length = 674
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -2
Query: 199 IKRIGLIVQEKSVSVHYSHTVGILHCD--PLDDLITQYCRC 83
++RI I ++ ++ Y H + I+HCD P + L+ Y RC
Sbjct: 505 LRRIQAIARQCLEALVYLHHLNIVHCDLKPENILMKSYSRC 545
>01_06_1238 +
35646647-35646932,35647333-35647950,35648732-35649032,
35649137-35649416,35649715-35649822,35650088-35650366,
35650805-35650963
Length = 676
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -2
Query: 199 IKRIGLIVQEKSVSVHYSHTVGILHCD--PLDDLITQYCRC 83
+ RI I ++ ++ Y H + I+HCD P + LI Y RC
Sbjct: 527 LPRIQAIARQCLEALVYLHHLRIIHCDLKPENILIKSYSRC 567
>07_03_0697 +
20759176-20759817,20760592-20760708,20761422-20761696,
20761906-20762068,20762293-20762421,20762989-20763713,
20763853-20764081
Length = 759
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 232 QKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXKSGEQQKGKG 387
+ + RK KGK E +PA PT + + K + K GE +K G
Sbjct: 18 KSNSKEERKHKKGKHE-RPAASDEAPTPRSDAKGSKGKKRKHKDGEGEKEHG 68
>08_02_0646 + 19676133-19677581
Length = 482
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 235 KEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXKSGEQQKGK 384
K D+ + ++KG KPAK + K +K + VK+ +S K K
Sbjct: 130 KTDKAATAKSKGTDTAKPAKVAKAGSAKAVKPVKPVKTAKSESVVAAKAK 179
>07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305
Length = 334
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/63 (28%), Positives = 24/63 (38%)
Frame = +1
Query: 205 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXKSGEQQKGK 384
K + A+KE + KE KG PEP + E K K +Q+ G
Sbjct: 141 KKPAKDDAAKKEGEVPEKE-KGSPEPNKESAAAAADEEEGGEESGGKKGKKKKNKQKDGG 199
Query: 385 GPA 393
G A
Sbjct: 200 GEA 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,871,705
Number of Sequences: 37544
Number of extensions: 280956
Number of successful extensions: 768
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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