Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30563.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.096
SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   30   1.6  
SB_3663| Best HMM Match : MBT (HMM E-Value=0)                          30   2.1  
SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092)                29   2.7  
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)                      29   3.6  
SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)                  29   4.8  
SB_28488| Best HMM Match : PAX (HMM E-Value=0)                         29   4.8  
SB_54200| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_22299| Best HMM Match : Protamine_P2 (HMM E-Value=2.4)              28   6.3  
SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)                 28   6.3  
SB_35674| Best HMM Match : SH2 (HMM E-Value=0)                         28   6.3  
SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         28   8.4  
SB_49480| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)           28   8.4  

>SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 34.3 bits (75), Expect = 0.096
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +1

Query: 217 AGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQ 351
           A    +KE ++ RK+++GKP+P+  K    PTRK +K  + +  +
Sbjct: 293 ATSNEKKEQEKERKKSEGKPKPRSEK-EKQPTRKRVKRPEKLNKR 336


>SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 137 YGVGVVNRYALFLDDETDPLDALKAREQ 220
           Y +GV NR+ L L DE DP    K  E+
Sbjct: 6   YSIGVNNRFGLLLSDEEDPETTFKESEK 33


>SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 220 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKG 321
           G+ +QK+++  RK N+GKP P  +K + +    G
Sbjct: 46  GKTSQKDEKPERKSNRGKPGPNDSKYIRLAKAGG 79


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +1

Query: 205 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXKSGEQQKGK 384
           KSA  GEG +   ++ +K N G    K  K +T   +  + E +  K +     +++K K
Sbjct: 492 KSATGGEGKEAPAKKKQKHNDGDAPKKSKKKLTHEEKLKLAEEEKEKKKQQIQEDKEKKK 551


>SB_3663| Best HMM Match : MBT (HMM E-Value=0)
          Length = 327

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 208 SARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPT 312
           SA + +  ++E++   KE + KP+P+P     +PT
Sbjct: 158 SAASSDDEEEEEEEEEKEKEEKPKPEPELAPPLPT 192


>SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092)
          Length = 341

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +1

Query: 223 EGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXKSGEQQK 378
           E  QKE+ +  +  K + +PK AK  T  + K I+E +    QD +  E  K
Sbjct: 117 EEVQKEEDKDGEVEKSEEKPKEAKAETEESGK-IEEVETTTEQDKQPEEVVK 167


>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 253  RKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXK-SGEQQKGKG 387
            ++E + KP P P       + KG  E++  K +  K  GE +K KG
Sbjct: 1490 KEEPEEKPSPSPKTANKSESEKGKGESEKDKGESEKDKGESEKDKG 1535


>SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)
          Length = 311

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 214 RAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXKSGEQQKGK 384
           + G+GA ++++ + K+ KG  E +  K  T       K+      Q   +GEQ+KG+
Sbjct: 25  KEGKGATEQEKGAIKQGKGATEQE--KEATEQGNGASKQGTGASEQGKGAGEQEKGE 79


>SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)
          Length = 462

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +1

Query: 205 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXKSGEQQK 378
           K AR     + ++Q++ +E K +   K A+      R+G K  +  K+++ +  ++QK
Sbjct: 99  KRARTETTRRGQEQKTPEEGKNRNHQKKARTENTRRRQGEKPPEEGKNRNTRKRQEQK 156



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +1

Query: 205 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXKSGEQQKGK 384
           K AR     ++  Q+  +E K K   K  K  T  TR+G ++    + ++ K+ E+ K K
Sbjct: 384 KRARTKNTRRRHQQKPPEEGKNKKHQK--KATTKNTRRGQEQKPPEEGKNKKTPEEGKNK 441


>SB_28488| Best HMM Match : PAX (HMM E-Value=0)
          Length = 551

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/49 (22%), Positives = 27/49 (55%)
 Frame = +1

Query: 235 KEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXKSGEQQKG 381
           K++++  +++KGK + K  K  ++P+R     + ++ S   K   ++ G
Sbjct: 171 KKERKDEEDDKGKEDEKVEKNSSLPSRHNFSSSYSIASILKKPSAEEDG 219


>SB_54200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 996

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +1

Query: 223 EGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXKS 363
           EG  KED    KE KGK E    +G     ++G KE ++ K  D  S
Sbjct: 875 EGKNKEDNEKEKEKKGKDEKDEKEG-----KEG-KEDKDEKDSDGSS 915


>SB_22299| Best HMM Match : Protamine_P2 (HMM E-Value=2.4)
          Length = 488

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +1

Query: 229 AQKEDQRSRKENKGKPEPKPAKGVTVP----TRKGIKETQNVKSQDXKSGEQQKGK 384
           A +  Q SRK    KP+ K  K  T P     R+  ++T+  K QD    ++Q  +
Sbjct: 177 AARPRQASRKTKTSKPQDKQDKQATRPRPRQARRASRKTKTSKPQDRDKQDKQAAR 232


>SB_15999| Best HMM Match : LRR_1 (HMM E-Value=1.7e-21)
          Length = 791

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 208 SARAGEGAQ--KEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXKSGE 369
           +A  GE A    +D  + K +K K +P+  K VT+  + G+K    VK +   S +
Sbjct: 135 NADYGEAASLTADDSTAHKSDK-KHDPEAKKQVTITVQPGVKPKPTVKKRSTPSAD 189


>SB_35674| Best HMM Match : SH2 (HMM E-Value=0)
          Length = 871

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 265 KGKPEPKPAKGVTVPTRKGIKETQNVKSQDXK-SGEQQKGKG 387
           K KP P P       + KG  E++  K +  K  GE +K KG
Sbjct: 73  KEKPSPSPKTANKSESEKGKGESEKDKGESEKDKGESEKDKG 114


>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +2

Query: 557  PGRCRASRFHQDHRVSLVQGTARAGS---FDNRG 649
            PGR R +R    HR +  Q + RAGS   F NRG
Sbjct: 1724 PGRVRYARGPDKHRETSTQFSGRAGSFIRFPNRG 1757


>SB_49480| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 301 TVPTRKGIKETQNVKSQDXKSGEQQKG 381
           T  TR  +K+  NVK  D +SG+ Q G
Sbjct: 7   TDSTRINVKDMTNVKKDDTRSGQTQAG 33


>SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)
          Length = 721

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 202 VKSARAGEGAQKEDQRSRKENKGKPEPKP 288
           + SA   + A++E+  +R+EN   P+P+P
Sbjct: 672 LSSAEPSKAAEQEETSTREENSVDPQPEP 700


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,876,146
Number of Sequences: 59808
Number of extensions: 303339
Number of successful extensions: 865
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)