Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30563.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-8|CAM36349.1|  544|Caenorhabditis elegans Hypothetical ...    28   5.6  
AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophi...    28   5.6  
Z70684-8|CAA94603.2|  360|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF043692-2|AAB97531.1|  253|Caenorhabditis elegans Hypothetical ...    28   7.4  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    27   9.8  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   9.8  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   9.8  

>CU457741-8|CAM36349.1|  544|Caenorhabditis elegans Hypothetical
           protein C42C1.8 protein.
          Length = 544

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/45 (28%), Positives = 29/45 (64%)
 Frame = +1

Query: 241 DQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXKSGEQQ 375
           +++++  NK KP+PK  K     ++KG K+++N + Q+ K+  ++
Sbjct: 9   ERKNQNPNKSKPDPKEKKS----SKKG-KKSKNTEEQEDKTKTEE 48


>AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform a
           protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 623 RAGSFDNRGXT*FDRRSGSDKTGV 694
           R G    RG   FDR+SGSD+TGV
Sbjct: 169 RGGGRGGRGRQ-FDRQSGSDRTGV 191


>Z70684-8|CAA94603.2|  360|Caenorhabditis elegans Hypothetical
           protein F28D1.8 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 205 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRK 318
           K + AG+G  K+  +  KE KG  + +  K  + PT+K
Sbjct: 321 KKSGAGKGKGKKKSKVSKEKKGGKKVQKKKPASKPTKK 358


>AF043692-2|AAB97531.1|  253|Caenorhabditis elegans Hypothetical
           protein C17F3.3 protein.
          Length = 253

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 205 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGI-KETQNVKSQDXKSGEQQKG 381
           K     E  +K++ + +KE++ K + KP  G     ++ + KET+  + ++ K  E +K 
Sbjct: 133 KEKSKDEEKKKDEVKDKKEDEKKDDKKP--GEKEEKKEEVKKETKKEEKKEEKKEEPKKS 190

Query: 382 KGP 390
           + P
Sbjct: 191 EAP 193


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 250  SRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXKSGEQQK 378
            ++KE +GKPE K  K  T      I ET    ++D    +Q +
Sbjct: 9171 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSE 9213


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 250  SRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXKSGEQQK 378
            ++KE +GKPE K  K  T      I ET    ++D    +Q +
Sbjct: 9191 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSE 9233


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 250  SRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXKSGEQQK 378
            ++KE +GKPE K  K  T      I ET    ++D    +Q +
Sbjct: 9191 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSE 9233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,908,691
Number of Sequences: 27780
Number of extensions: 220516
Number of successful extensions: 664
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)