Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30563.Seq
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g28770.1 68416.m03591 expressed protein 32 0.32
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 30 1.3
At2g40120.1 68415.m04934 protein kinase family protein contains ... 29 2.2
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 29 3.0
At3g10680.1 68416.m01284 heat shock protein-related contains wea... 29 3.9
At1g73460.1 68414.m08504 protein kinase family protein contains ... 29 3.9
At1g73450.1 68414.m08503 protein kinase, putative similar to nuc... 29 3.9
At3g17750.1 68416.m02265 protein kinase family protein contains ... 28 5.2
At5g63530.1 68418.m07974 copper chaperone (CCH)-related low simi... 27 9.0
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 32.3 bits (70), Expect = 0.32
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +1
Query: 223 EGAQKEDQRSRKENKG-KPEPKPAKGVTVPTRKGIKETQNVKSQDXKSGEQQK 378
E Q + S K KG K E K AK V K + T+N +SGE K
Sbjct: 773 ENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNK 825
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Frame = +1
Query: 148 SSEQIRSFLGR*DRSS*CVKSARAGE--GAQKEDQRSR-KENKGKPEPKPAKGVTVPTRK 318
S E+ +S + D ++ + R E + K+ Q R KE KP+PK +K ++ P ++
Sbjct: 877 SKEEAKSNIAVKDNAAEKKRPIRTQEKPSSNKKGQLMRQKETTEKPDPKISKDLSEPRKR 936
Query: 319 GIKETQNVKSQDXKSGEQQKGKG 387
E + ++++ + +++G+G
Sbjct: 937 KFGEDRGEENRNGQRKRKKQGQG 959
>At2g40120.1 68415.m04934 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 570
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -2
Query: 199 IKRIGLIVQEKSVSVHYSHTVGILHCD--PLDDLITQYCRC 83
+ R+ +I ++ ++ + H +GI+HCD P + LI Y RC
Sbjct: 365 LSRLQVITRQCLDALVFLHGLGIIHCDLKPENILIKSYKRC 405
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 223 EGAQKEDQRSRKENKGK-PEPKPAKGVTVPTRKGIKETQNVKSQDXKSGEQQKGK 384
E +KED S++E+K + PE K + + IKET+ + ++ S E + K
Sbjct: 354 EKREKEDSSSQEESKEEEPENKEKEASSSQEENEIKETEIKEKEESSSQEGNENK 408
>At3g10680.1 68416.m01284 heat shock protein-related contains weak
similarity to Pfam profile PF00011: Hsp20/alpha
crystallin family
Length = 490
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 205 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXKS 363
K +A + +K QRS +E G P P G T+ +K ++E + V + K+
Sbjct: 116 KQEKAVQDQEKIGQRSNQEKSGGPGP---NGSTLGRKKALEEEKQVGTSQEKT 165
>At1g73460.1 68414.m08504 protein kinase family protein contains
protein kinase domain Pfam:PF00069
Length = 1169
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -2
Query: 160 SVHYSHTVGILHCD--PLDDLITQYCRC 83
S+ + H +G++HCD P + L+ Y RC
Sbjct: 975 SLQFLHGLGLIHCDLKPENILVKSYSRC 1002
>At1g73450.1 68414.m08503 protein kinase, putative similar to nuclear
serine/threonine protein kinase GI:3582644 from [Rattus
norvegicus]
Length = 1152
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -2
Query: 160 SVHYSHTVGILHCD--PLDDLITQYCRC 83
S+ + H +G++HCD P + L+ Y RC
Sbjct: 958 SLQFLHGLGLIHCDLKPENILVKSYSRC 985
>At3g17750.1 68416.m02265 protein kinase family protein contains Pfam
profile: PF00069 Eukaryotic protein kinase domain
Length = 1138
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -2
Query: 160 SVHYSHTVGILHCD--PLDDLITQYCRC 83
++++ H +G++HCD P + LI Y RC
Sbjct: 944 ALNFLHGLGLIHCDLKPENILIKSYSRC 971
>At5g63530.1 68418.m07974 copper chaperone (CCH)-related low
similarity to copper homeostasis factor [GI:3168840];
nearly identical to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 355
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 205 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXKSGEQQKGK 384
++A A EG +KE+++ E+KG+ E K K T +K + G +++GK
Sbjct: 248 EAAAAAEGEKKEEEKGEGESKGE-EGKDDKAKTDEEKKEGDGGKGEGEAADNGGGEEEGK 306
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,259,083
Number of Sequences: 28952
Number of extensions: 209803
Number of successful extensions: 574
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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