Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30562.Seq
         (499 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X99665-1|CAA67979.1|  106|Drosophila melanogaster mitochondrial ...    56   4e-08
BT001763-1|AAN71518.1|  106|Drosophila melanogaster RH08870p pro...    56   4e-08
AE014297-3317|AAF56127.1|  106|Drosophila melanogaster CG4412-PA...    56   4e-08
BT023609-1|AAY85009.1|  159|Drosophila melanogaster IP06415p pro...    38   0.006
AE014296-920|AAF47954.1|  147|Drosophila melanogaster CG12027-PA...    38   0.006

>X99665-1|CAA67979.1|  106|Drosophila melanogaster mitochondrial
           ATPase couplingfactor 6 subunit protein.
          Length = 106

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 29/51 (56%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
 Frame = -3

Query: 401 SKLVGLRAATTSMMVSRNLAAA--QKATDPIQQLFLDKIREYKQKSAGGKV 255
           S L G+R   T    +  + A    KA+DPIQQLFLDK+REYKQKSAGGK+
Sbjct: 5   SLLSGMRVLRTEARRNFGIVAPALNKASDPIQQLFLDKVREYKQKSAGGKL 55



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 267 GWQSPDASPAVXXXXXXXXXXXXKQYGGGPGIDMTAFPSLKFEEPKLDPIDE 112
           G +  D++P +            KQ+G     DM  FP  +F + K+DPI +
Sbjct: 52  GGKLVDSNPDIERELKTELDRVAKQFGSDGKTDMLKFPEFQFPDVKVDPITQ 103


>BT001763-1|AAN71518.1|  106|Drosophila melanogaster RH08870p
           protein.
          Length = 106

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 29/51 (56%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
 Frame = -3

Query: 401 SKLVGLRAATTSMMVSRNLAAA--QKATDPIQQLFLDKIREYKQKSAGGKV 255
           S L G+R   T    +  + A    KA+DPIQQLFLDK+REYKQKSAGGK+
Sbjct: 5   SLLSGMRVLRTEARRNFGIVAPALNKASDPIQQLFLDKVREYKQKSAGGKL 55



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 267 GWQSPDASPAVXXXXXXXXXXXXKQYGGGPGIDMTAFPSLKFEEPKLDPIDE 112
           G +  D++P +            KQ+G     DM  FP  +F + K+DPI +
Sbjct: 52  GGKLVDSNPDIERELKTELDRVAKQFGSDGKTDMLKFPEFQFPDVKVDPITQ 103


>AE014297-3317|AAF56127.1|  106|Drosophila melanogaster CG4412-PA
           protein.
          Length = 106

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 29/51 (56%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
 Frame = -3

Query: 401 SKLVGLRAATTSMMVSRNLAAA--QKATDPIQQLFLDKIREYKQKSAGGKV 255
           S L G+R   T    +  + A    KA+DPIQQLFLDK+REYKQKSAGGK+
Sbjct: 5   SLLSGMRVLRTEARRNFGIVAPALNKASDPIQQLFLDKVREYKQKSAGGKL 55



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 267 GWQSPDASPAVXXXXXXXXXXXXKQYGGGPGIDMTAFPSLKFEEPKLDPIDE 112
           G +  D++P +            KQ+G     DM  FP  +F + K+DPI +
Sbjct: 52  GGKLVDSNPDIERELKTELDRVAKQFGSDGKTDMLKFPEFQFPDVKVDPITQ 103


>BT023609-1|AAY85009.1|  159|Drosophila melanogaster IP06415p
           protein.
          Length = 159

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 18/39 (46%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
 Frame = -3

Query: 368 SMMVSRNLA--AAQKATDPIQQLFLDKIREYKQKSAGGK 258
           S+++ R+++  A+ +  DPI Q+FLDK+REY+ KS  GK
Sbjct: 21  SLVLCRSVSNTASLRYKDPIYQIFLDKVREYRLKSPKGK 59



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 195 QYGGGPGIDMTAFPSLKFEEPKLDPIDEQAAPK 97
           QYGGG G+DM  FP  K  +  +DPI     P+
Sbjct: 81  QYGGGEGVDMLEFPKFKLPDIDIDPISVDDLPE 113


>AE014296-920|AAF47954.1|  147|Drosophila melanogaster CG12027-PA
           protein.
          Length = 147

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 18/39 (46%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
 Frame = -3

Query: 368 SMMVSRNLA--AAQKATDPIQQLFLDKIREYKQKSAGGK 258
           S+++ R+++  A+ +  DPI Q+FLDK+REY+ KS  GK
Sbjct: 9   SLVLCRSVSNTASLRYKDPIYQIFLDKVREYRLKSPKGK 47



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 195 QYGGGPGIDMTAFPSLKFEEPKLDPIDEQAAPK 97
           QYGGG G+DM  FP  K  +  +DPI     P+
Sbjct: 69  QYGGGEGVDMLEFPKFKLPDIDIDPISVDDLPE 101


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,446,685
Number of Sequences: 53049
Number of extensions: 398046
Number of successful extensions: 618
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1763278080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)