Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30561.Seq
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    81   2e-16
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    81   2e-16
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    71   2e-13
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.0  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   5.0  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   5.0  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   6.6  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 81.0 bits (191), Expect = 2e-16
 Identities = 40/69 (57%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
 Frame = +3

Query: 246 QEEREIF-KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSP 422
           Q++RE+  KRAE Y  EYR  ER++I L R+AR  GNYYVP E KL FVIRIRGIN + P
Sbjct: 46  QKKRELIAKRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPP 105

Query: 423 KSVKFCNCL 449
           K+ K    L
Sbjct: 106 KARKIMQLL 114



 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 26/51 (50%), Positives = 39/51 (76%)
 Frame = +1

Query: 502 EYVRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGXRIPITSNSIVEKRLHK 654
           E +++ EPY+ +G PNLK+VREL+YKRGF K++  RI ++ N+I+E  L K
Sbjct: 133 EMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGK 183



 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 41/108 (37%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNM--YVSPSLTLLGDTPT*RVSVS*YTNVDSPS 595
           + RK++QL RL QINNGVFV+ NKAT  M   V P +T  G      V    Y       
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVT-YGIPNLKTVRELLYKRGFGKV 164

Query: 596 *VDXVYQSLPTALLRRGSIKHNIICVXDLIHEIFTVWRKVQYASNFLW 739
               +  S   A++     K++I+ + DLIHEI+TV    + A+NF+W
Sbjct: 165 NKQRIALS-DNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQAANFIW 211


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = +3

Query: 207 EITGYXKEAFFCHQEEREIF-KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLA 383
           +I     E     Q++RE+  KRAE Y  EYR  ER++I LAR+AR  GNY+VP E KL 
Sbjct: 32  QIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLI 91

Query: 384 FVIRIRGINQVSPKSVKFCNCL 449
           FV+RIRGIN + PK+ K    L
Sbjct: 92  FVVRIRGINNIPPKARKIMQLL 113



 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 26/51 (50%), Positives = 39/51 (76%)
 Frame = +1

Query: 502 EYVRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGXRIPITSNSIVEKRLHK 654
           E +++ EPY+ +G PN K+VREL+YKRGF K++  RIP++ N+I+E  L K
Sbjct: 132 EMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGK 182



 Score = 59.3 bits (137), Expect = 6e-10
 Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNM--YVSPSLTL-LGDTPT*RVSVS*YTNVDSP 592
           + RK++QL RL QINNG+FV+ NKA   M   V P +T  + +  T R  +  Y      
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELI--YKRGFGK 162

Query: 593 S*VDXVYQSLPTALLRRGSIKHNIICVXDLIHEIFTVWRKVQYASNFLW 739
                +  S   A++     K++I+ V DLIHEI+TV    + A+NFLW
Sbjct: 163 VNKQRIPLS-DNAIIEAALGKYSILSVEDLIHEIYTVGPNFKQAANFLW 210


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 32/68 (47%), Positives = 44/68 (64%)
 Frame = +3

Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
           +  +E FKRAE ++  YR +ER+ IRL R A+N+G+ +VP E KL FVIRI G+  + PK
Sbjct: 45  KNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPK 104

Query: 426 SVKFCNCL 449
             K    L
Sbjct: 105 IRKVLRLL 112



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 27/51 (52%), Positives = 40/51 (78%)
 Frame = +1

Query: 502 EYVRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGXRIPITSNSIVEKRLHK 654
           + +RI EPY+ +G PNL SVREL+YKRGF K++G RI ++ N+++E+ L K
Sbjct: 131 QMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGK 181



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMY-VSPSLTLLGDTPT*RVSVS*YTNVDSPS* 598
           ++RKVL+L RL +INN VFVR NKA   M  +     + G      V    Y        
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKIN 163

Query: 599 VDXVYQSLPTALLRRGSIKHNIICVXDLIHEIFTVWRKVQYASNFLW 739
              +  S   AL+     K+++I + D+IHEI+ V    +  + FLW
Sbjct: 164 GQRIALS-DNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLW 209


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 270 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 371
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 308  FLDAVFLDVLFSPLEDFPFFLMAEERLFXVTC 213
            FL +V+  +  S +ED+   L  E+++F V C
Sbjct: 1092 FLQSVYSSLSESQVEDYQMELFREKQIFSVLC 1123


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 476 FVRLNKATVNMYVSPSLTLLGDTPT*RVSVS*YTNVDSP 592
           FV+  K  V  Y   SL +LGD     +SVS  T++D+P
Sbjct: 562 FVKSIKKQVVNYTESSLAMLGDLL--NISVSPVTDMDAP 598


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 724 RVLNFSPNSEDLMDEVXNTDNVVFYG 647
           +++N +P +E   DE+ N DN+ F G
Sbjct: 635 QLINTAPLTEYEQDEINNYDNIYFTG 660


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,425
Number of Sequences: 5004
Number of extensions: 57220
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)