Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30561.Seq
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    28   0.11 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.7  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   3.0  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   3.0  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   3.0  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   3.0  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   3.0  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   3.0  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   3.0  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   3.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.3  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    21   9.3  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    21   9.3  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 646 ASSQQCCWK*LVYVVHSAWRIHVCILTHGHSLSWG 542
           A++   CW  + Y+V  AW I    ++    L WG
Sbjct: 65  AAAVMSCWMNVYYIVILAWAIFYFFMSMRSELPWG 99


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
 Frame = -1

Query: 658 VFYGASSQQC---CWK*LVYVVHSAWRIHVCILTHGHSLSW 545
           +F G     C   CW  + Y++  AW +   +++    L W
Sbjct: 96  IFKGIGYATCVLSCWTNIYYIIILAWALFYLLVSLRIDLPW 136


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
 Frame = -1

Query: 658 VFYGASSQQC---CWK*LVYVVHSAWRIHVCILTHGHSLSW 545
           +F G     C   CW  + Y++  AW +   +++    L W
Sbjct: 149 IFKGIGYATCVLSCWTNIYYIIILAWALFYLLVSLRIDLPW 189


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/41 (21%), Positives = 24/41 (58%)
 Frame = +3

Query: 225 KEAFFCHQEEREIFKRAEQYVKEYRIKERDEIRLARQARNR 347
           +E     + ERE  +  ++ + EY ++   E +L++++++R
Sbjct: 40  REWMIQQEREREHERLKKKMILEYELRRAREKKLSKRSKSR 80


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/41 (21%), Positives = 24/41 (58%)
 Frame = +3

Query: 225 KEAFFCHQEEREIFKRAEQYVKEYRIKERDEIRLARQARNR 347
           +E     + ERE  +  ++ + EY ++   E +L++++++R
Sbjct: 40  REWMIQQEREREHERLKKKMILEYELRRAREKKLSKRSKSR 80


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/41 (21%), Positives = 24/41 (58%)
 Frame = +3

Query: 225 KEAFFCHQEEREIFKRAEQYVKEYRIKERDEIRLARQARNR 347
           +E     + ERE  +  ++ + EY ++   E +L++++++R
Sbjct: 40  REWMIQQEREREHERLKKKMILEYELRRAREKKLSKRSKSR 80


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/41 (21%), Positives = 24/41 (58%)
 Frame = +3

Query: 225 KEAFFCHQEEREIFKRAEQYVKEYRIKERDEIRLARQARNR 347
           +E     + ERE  +  ++ + EY ++   E +L++++++R
Sbjct: 40  REWMIQQEREREHERLKKKMILEYELRRAREKKLSKRSKSR 80


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/41 (21%), Positives = 24/41 (58%)
 Frame = +3

Query: 225 KEAFFCHQEEREIFKRAEQYVKEYRIKERDEIRLARQARNR 347
           +E     + ERE  +  ++ + EY ++   E +L++++++R
Sbjct: 40  REWMIQQEREREHERLKKKMILEYELRRAREKKLSKRSKSR 80


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/41 (21%), Positives = 24/41 (58%)
 Frame = +3

Query: 225 KEAFFCHQEEREIFKRAEQYVKEYRIKERDEIRLARQARNR 347
           +E     + ERE  +  ++ + EY ++   E +L++++++R
Sbjct: 40  REWMIQQEREREHERLKKKMILEYELRRAREKKLSKRSKSR 80


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/41 (21%), Positives = 24/41 (58%)
 Frame = +3

Query: 225 KEAFFCHQEEREIFKRAEQYVKEYRIKERDEIRLARQARNR 347
           +E     + ERE  +  ++ + EY ++   E +L++++++R
Sbjct: 40  REWMIQQEREREHERLKKKMILEYELRRAREKKLSKRSKSR 80


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/41 (21%), Positives = 24/41 (58%)
 Frame = +3

Query: 225 KEAFFCHQEEREIFKRAEQYVKEYRIKERDEIRLARQARNR 347
           +E     + ERE  +  ++ + EY ++   E +L++++++R
Sbjct: 40  REWMIQQEREREHERLKKKMILEYELRRAREKKLSKRSKSR 80


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 393 RIRGINQVSPKSVKFCNCLDC 455
           +  GI+  +P     C+CLDC
Sbjct: 312 KYEGISS-TPSQASSCSCLDC 331


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 219 YXKEAFFCHQEEREIFKRAEQYVKEYRIKERD-EIRLARQARNR 347
           Y +E        RE  K+  QY K +  KE+  E R +R+  +R
Sbjct: 231 YSRERSCSRDRNREYRKKDRQYEKLHNEKEKFLEERTSRKRYSR 274


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 219 YXKEAFFCHQEEREIFKRAEQYVKEYRIKERD-EIRLARQARNR 347
           Y +E        RE  K+  QY K +  KE+  E R +R+  +R
Sbjct: 231 YSRERSCSRDRNREYRKKDRQYEKLHNEKEKFLEERTSRKRYSR 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,236
Number of Sequences: 438
Number of extensions: 4350
Number of successful extensions: 23
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)