Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30560.Seq
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   104   9e-24
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   104   9e-24
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    31   0.10 
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   2.2  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   6.8  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    25   9.0  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  104 bits (249), Expect = 9e-24
 Identities = 46/77 (59%), Positives = 62/77 (80%)
 Frame = +1

Query: 25  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 204
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 205 DIRVTVKGGGHVAQVYA 255
           DIRV V GGGHV+Q+YA
Sbjct: 61  DIRVRVSGGGHVSQIYA 77



 Score =  103 bits (248), Expect = 1e-23
 Identities = 48/63 (76%), Positives = 55/63 (87%)
 Frame = +3

Query: 255 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 434
           IRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QK
Sbjct: 78  IRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQK 137

Query: 435 SYR 443
           SYR
Sbjct: 138 SYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  104 bits (249), Expect = 9e-24
 Identities = 46/77 (59%), Positives = 62/77 (80%)
 Frame = +1

Query: 25  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 204
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 205 DIRVTVKGGGHVAQVYA 255
           DIRV V GGGHV+Q+YA
Sbjct: 61  DIRVRVSGGGHVSQIYA 77



 Score =  103 bits (248), Expect = 1e-23
 Identities = 48/63 (76%), Positives = 55/63 (87%)
 Frame = +3

Query: 255 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 434
           IRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QK
Sbjct: 78  IRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQK 137

Query: 435 SYR 443
           SYR
Sbjct: 138 SYR 140


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +1

Query: 46  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 225
           G++K++ A      G G   VNG P D+   R++  K      L    + +  ++  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 226 GGGHVAQ 246
           GGG   Q
Sbjct: 71  GGGPTGQ 77


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 227 VVVM*HKFTHQTSYFKGSDRLLPEICR 307
           V+V   KF    +Y KG+  ++P IC+
Sbjct: 766 VIVKHGKFKKMDAYVKGAPEIMPSICK 792


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 112  RLHAAFHDHACNTQLRWRFS 53
            RLH+ F++H C + L+  FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 424 DTRNLTVKPSRKPSGGIVAASCCH 495
           D  N+ VKP+  P+  +    CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,015
Number of Sequences: 5004
Number of extensions: 44118
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)