Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30560.Seq
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 119 2e-27
11_01_0155 - 1287003-1287452 119 2e-27
03_06_0097 - 31632238-31632525,31633386-31633769 31 0.42
07_03_0227 - 15398371-15398925 30 0.97
11_06_0598 - 25391923-25393197 29 3.0
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 28 3.9
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 28 5.2
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 5.2
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 27 6.8
11_04_0272 - 15631598-15631898,15633162-15633291,15636394-156365... 27 9.0
>12_01_0152 - 1168928-1169377
Length = 149
Score = 119 bits (286), Expect = 2e-27
Identities = 55/74 (74%), Positives = 63/74 (85%)
Frame = +3
Query: 222 QGWWSCSTSLRIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 401
+G S IRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKF
Sbjct: 76 RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135
Query: 402 GGPGARARYQKSYR 443
GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149
Score = 99.5 bits (237), Expect = 1e-21
Identities = 42/80 (52%), Positives = 59/80 (73%)
Frame = +1
Query: 16 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 195
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 196 SMVDIRVTVKGGGHVAQVYA 255
+D+R+ V+GGG +Q+YA
Sbjct: 67 KDIDMRIRVRGGGKTSQIYA 86
>11_01_0155 - 1287003-1287452
Length = 149
Score = 119 bits (286), Expect = 2e-27
Identities = 55/74 (74%), Positives = 63/74 (85%)
Frame = +3
Query: 222 QGWWSCSTSLRIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 401
+G S IRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKF
Sbjct: 76 RGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKF 135
Query: 402 GGPGARARYQKSYR 443
GG GARAR+QKSYR
Sbjct: 136 GGRGARARFQKSYR 149
Score = 99.5 bits (237), Expect = 1e-21
Identities = 42/80 (52%), Positives = 59/80 (73%)
Frame = +1
Query: 16 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 195
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 196 SMVDIRVTVKGGGHVAQVYA 255
+D+R+ V+GGG +Q+YA
Sbjct: 67 KDIDMRIRVRGGGKTSQIYA 86
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 31.5 bits (68), Expect = 0.42
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +1
Query: 28 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 198
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 199 MVDIRVTVKGGGHVAQVYA 255
D+ V V GGG Q A
Sbjct: 153 SYDVFVKVHGGGLSGQAQA 171
>07_03_0227 - 15398371-15398925
Length = 184
Score = 30.3 bits (65), Expect = 0.97
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -2
Query: 166 VPEVCTAAVWAQPSPMGARLHAAFH--DHACNTQLRWRF 56
+P +C A W P+ A H FH C+ + RW +
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61
>11_06_0598 - 25391923-25393197
Length = 424
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -2
Query: 424 LARAPGPPNFLGSQRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIRAFEIACLMRKL 245
LA PP L S TS L + T + ++ S+TY AIR F ++R L
Sbjct: 254 LATLVSPPKLLQSLNISGITSGLPDWITELDQLTKITLSNTYLGEDAIRVFGKLRILRCL 313
Query: 244 VL 239
L
Sbjct: 314 RL 315
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +1
Query: 46 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 225
G++K + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 226 GGGHVAQVYA 255
GGG QV A
Sbjct: 354 GGGVSGQVGA 363
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 8 RQDVSPSRPSKYSDVRKPPPQLRIAS 85
R+ S S P K SD R PPP+ R S
Sbjct: 33 RRSTSRSPPPKKSDSRSPPPRRRSTS 58
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 109 NGRPLDLVEPRLLQYKLQEPILLL 180
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 120 WAPVYTQHSMTTLAIRNCGGGFLTSEYLD 34
W V T H +T +A R+C G F ++LD
Sbjct: 18 WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45
>11_04_0272 -
15631598-15631898,15633162-15633291,15636394-15636544,
15636632-15636730,15636912-15637063,15637079-15637301
Length = 351
Score = 27.1 bits (57), Expect = 9.0
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Frame = +3
Query: 210 QSDSQGWWSC-STSLRIRQAISKALI--AFYQKYVDEASKKEIKDI--LVQYDRSLLVAD 374
QS + WW S R +I+ L AFY+KY E+ K+ K+ L Q + + +
Sbjct: 24 QSSAFEWWDAHKKSYSERISITWELFKEAFYKKYFPESVKRMKKEFLELKQVEYEIEFSR 83
Query: 375 PRRCEPKKFGGPGARA-RYQKSYR*AFKKTI 464
R P+ G++A R++ R K+ +
Sbjct: 84 LARFAPEFVQTDGSKARRFESGLRQPLKRRV 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,309,446
Number of Sequences: 37544
Number of extensions: 348731
Number of successful extensions: 976
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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