Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30560.Seq
(518 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 136 6e-35
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 137 2e-32
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 137 2e-32
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 137 2e-32
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 137 2e-32
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 83 6e-16
BC064361-1|AAH64361.1| 1056|Homo sapiens pleckstrin homology dom... 31 1.8
AK074103-1|BAB84929.1| 628|Homo sapiens FLJ00174 protein protein. 31 1.8
AJ002220-1|CAB91652.1| 926|Homo sapiens protein ( Homo sapiens ... 31 1.8
AB002354-1|BAA20813.2| 1058|Homo sapiens KIAA0356 protein protein. 31 1.8
BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for IM... 30 5.6
AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein. 30 5.6
AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein. 30 5.6
M62302-2|AAA58501.1| 372|Homo sapiens growth/differentiation fa... 29 9.8
AC003972-2|AAB94786.1| 372|Homo sapiens GDF-1 protein. 29 9.8
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 136 bits (329), Expect(2) = 6e-35
Identities = 59/81 (72%), Positives = 74/81 (91%)
Frame = +1
Query: 22 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 201
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 202 VDIRVTVKGGGHVAQVYASDK 264
VDIRV VKGGGHVAQ+Y +
Sbjct: 66 VDIRVRVKGGGHVAQIYGESQ 86
Score = 30.7 bits (66), Expect(2) = 6e-35
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 286 PSTRNM*TKPQRRKSKTS*YNTIGVCW 366
P TRNM + RR+SKTS + G CW
Sbjct: 126 PITRNMWMRLPRRRSKTSSSSMTGPCW 152
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 137 bits (332), Expect = 2e-32
Identities = 60/78 (76%), Positives = 74/78 (94%)
Frame = +1
Query: 22 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 201
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 202 VDIRVTVKGGGHVAQVYA 255
VDIRV VKGGGHVAQ+YA
Sbjct: 66 VDIRVRVKGGGHVAQIYA 83
Score = 125 bits (302), Expect = 8e-29
Identities = 57/63 (90%), Positives = 62/63 (98%)
Frame = +3
Query: 255 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 434
IRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQK
Sbjct: 84 IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQK 143
Query: 435 SYR 443
SYR
Sbjct: 144 SYR 146
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 137 bits (332), Expect = 2e-32
Identities = 60/78 (76%), Positives = 74/78 (94%)
Frame = +1
Query: 22 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 201
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 202 VDIRVTVKGGGHVAQVYA 255
VDIRV VKGGGHVAQ+YA
Sbjct: 66 VDIRVRVKGGGHVAQIYA 83
Score = 125 bits (302), Expect = 8e-29
Identities = 57/63 (90%), Positives = 62/63 (98%)
Frame = +3
Query: 255 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 434
IRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQK
Sbjct: 84 IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQK 143
Query: 435 SYR 443
SYR
Sbjct: 144 SYR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 137 bits (332), Expect = 2e-32
Identities = 60/78 (76%), Positives = 74/78 (94%)
Frame = +1
Query: 22 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 201
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 202 VDIRVTVKGGGHVAQVYA 255
VDIRV VKGGGHVAQ+YA
Sbjct: 66 VDIRVRVKGGGHVAQIYA 83
Score = 125 bits (302), Expect = 8e-29
Identities = 57/63 (90%), Positives = 62/63 (98%)
Frame = +3
Query: 255 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 434
IRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQK
Sbjct: 84 IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQK 143
Query: 435 SYR 443
SYR
Sbjct: 144 SYR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 137 bits (332), Expect = 2e-32
Identities = 60/78 (76%), Positives = 74/78 (94%)
Frame = +1
Query: 22 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 201
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 202 VDIRVTVKGGGHVAQVYA 255
VDIRV VKGGGHVAQ+YA
Sbjct: 66 VDIRVRVKGGGHVAQIYA 83
Score = 125 bits (302), Expect = 8e-29
Identities = 57/63 (90%), Positives = 62/63 (98%)
Frame = +3
Query: 255 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQK 434
IRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQK
Sbjct: 84 IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQK 143
Query: 435 SYR 443
SYR
Sbjct: 144 SYR 146
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 83.0 bits (196), Expect = 6e-16
Identities = 50/145 (34%), Positives = 69/145 (47%)
Frame = +1
Query: 25 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 204
+Q+VQ+F K+ A AV C+ G G +R+N PL+++ LQYKL E LLL KE+ + +
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77
Query: 205 DIRVTVKGGGHVAQVYASDKLFQRL*SPSTRNM*TKPQRRKSKTS*YNTIGVCWWLTXXX 384
DI V VKG GHV Q+YA + + P + T CWW T
Sbjct: 78 DIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEASEEIKDT----LTRPCWWFTPVA 133
Query: 385 XXXXXXXXXXXXXDTRNLTVKPSRK 459
TRN + KP +K
Sbjct: 134 MNPRNLQALVPVLTTRNHSSKPIKK 158
>BC064361-1|AAH64361.1| 1056|Homo sapiens pleckstrin homology domain
containing, family M (with RUN domain) member 1 protein.
Length = 1056
Score = 31.5 bits (68), Expect = 1.8
Identities = 22/56 (39%), Positives = 28/56 (50%)
Frame = -3
Query: 309 RLHISGRRRSEPLK*LV*CVNLCYMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQ 142
R+H+ GRRR E LK L + LC + +NHR + L E RF LQQ
Sbjct: 914 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 967
>AK074103-1|BAB84929.1| 628|Homo sapiens FLJ00174 protein protein.
Length = 628
Score = 31.5 bits (68), Expect = 1.8
Identities = 22/56 (39%), Positives = 28/56 (50%)
Frame = -3
Query: 309 RLHISGRRRSEPLK*LV*CVNLCYMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQ 142
R+H+ GRRR E LK L + LC + +NHR + L E RF LQQ
Sbjct: 486 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 539
>AJ002220-1|CAB91652.1| 926|Homo sapiens protein ( Homo sapiens B2
gene partial cDNA, clone B2E. ).
Length = 926
Score = 31.5 bits (68), Expect = 1.8
Identities = 22/56 (39%), Positives = 28/56 (50%)
Frame = -3
Query: 309 RLHISGRRRSEPLK*LV*CVNLCYMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQ 142
R+H+ GRRR E LK L + LC + +NHR + L E RF LQQ
Sbjct: 784 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 837
>AB002354-1|BAA20813.2| 1058|Homo sapiens KIAA0356 protein protein.
Length = 1058
Score = 31.5 bits (68), Expect = 1.8
Identities = 22/56 (39%), Positives = 28/56 (50%)
Frame = -3
Query: 309 RLHISGRRRSEPLK*LV*CVNLCYMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQ 142
R+H+ GRRR E LK L + LC + +NHR + L E RF LQQ
Sbjct: 916 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 969
>BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for
IMAGE:6451327) protein.
Length = 204
Score = 29.9 bits (64), Expect = 5.6
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 312 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 395
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein.
Length = 689
Score = 29.9 bits (64), Expect = 5.6
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 312 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 395
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein.
Length = 198
Score = 29.9 bits (64), Expect = 5.6
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 312 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 395
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>M62302-2|AAA58501.1| 372|Homo sapiens growth/differentiation
factor 1 protein.
Length = 372
Score = 29.1 bits (62), Expect = 9.8
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +3
Query: 336 ILVQYDRSLL--VADPRR-CEPKKFGGPGARARYQKSYR*AFKKTIGWYR 476
+LV D L +A PRR EP GGPG R ++ Y +F++ +GW+R
Sbjct: 236 LLVTLDPRLCHPLARPRRDAEPVLGGGPGGACRARRLYV-SFRE-VGWHR 283
>AC003972-2|AAB94786.1| 372|Homo sapiens GDF-1 protein.
Length = 372
Score = 29.1 bits (62), Expect = 9.8
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +3
Query: 336 ILVQYDRSLL--VADPRR-CEPKKFGGPGARARYQKSYR*AFKKTIGWYR 476
+LV D L +A PRR EP GGPG R ++ Y +F++ +GW+R
Sbjct: 236 LLVTLDPRLCHPLARPRRDAEPVLGGGPGGACRARRLYV-SFRE-VGWHR 283
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,411,500
Number of Sequences: 237096
Number of extensions: 1890024
Number of successful extensions: 8065
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8064
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4933413474
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -