Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30559.Seq
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 83 5e-17
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 82 9e-17
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 71 2e-13
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 29 0.65
SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce... 29 0.86
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 28 1.1
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 4.6
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 25 8.0
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 8.0
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 82.6 bits (195), Expect = 5e-17
Identities = 42/82 (51%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +3
Query: 207 EITGYAKEAFFCHQEEREIF-KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLA 383
+I A E Q++RE+ KRAE Y EYR ER++I LAR+AR GNY+VP E KL
Sbjct: 32 QIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLI 91
Query: 384 FVIRIRGINQVSPKSVKFCNCL 449
FV+RIRGIN + PK+ K L
Sbjct: 92 FVVRIRGINNIPPKARKIMQLL 113
Score = 61.3 bits (142), Expect = 1e-10
Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNM--YVSPSLTL-LGDTPT*RVSVS*YTNVDSP 592
+ RK++QL RL QINNG+FV+ NKA M V P +T + + T R + Y
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELI--YKRGFGK 162
Query: 593 S*VDNVYQSLSNSIVEKRLHKHNIICVEDLIHEIFTVG 706
+ S N+I+E L K++I+ VEDLIHEI+TVG
Sbjct: 163 VNKQRIPLS-DNAIIEAALGKYSILSVEDLIHEIYTVG 199
Score = 57.6 bits (133), Expect = 2e-09
Identities = 22/40 (55%), Positives = 33/40 (82%)
Frame = +1
Query: 502 EYVRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 621
E +++ EPY+ +G PN K+VREL+YKRGF K++ QRIP++
Sbjct: 132 EMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLS 171
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 81.8 bits (193), Expect = 9e-17
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Frame = +3
Query: 222 AKEAFFCHQEEREIF-KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRI 398
A E Q++RE+ KRAE Y EYR ER++I L R+AR GNYYVP E KL FVIRI
Sbjct: 38 AAEKKAAQQKKRELIAKRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRI 97
Query: 399 RGINQVSPKSVKFCNCL 449
RGIN + PK+ K L
Sbjct: 98 RGINNIPPKARKIMQLL 114
Score = 63.3 bits (147), Expect = 3e-11
Identities = 42/97 (43%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNM--YVSPSLTLLGDTPT*RVSVS*YTNVDSPS 595
+ RK++QL RL QINNGVFV+ NKAT M V P +T G V Y
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVT-YGIPNLKTVRELLYKRGFGKV 164
Query: 596 *VDNVYQSLSNSIVEKRLHKHNIICVEDLIHEIFTVG 706
+ S N+I+E L K++I+ +EDLIHEI+TVG
Sbjct: 165 NKQRIALS-DNAIIEAALGKYSILSIEDLIHEIYTVG 200
Score = 56.4 bits (130), Expect = 4e-09
Identities = 22/40 (55%), Positives = 33/40 (82%)
Frame = +1
Query: 502 EYVRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 621
E +++ EPY+ +G PNLK+VREL+YKRGF K++ QRI ++
Sbjct: 133 EMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALS 172
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 70.9 bits (166), Expect = 2e-13
Identities = 32/68 (47%), Positives = 44/68 (64%)
Frame = +3
Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
+ +E FKRAE ++ YR +ER+ IRL R A+N+G+ +VP E KL FVIRI G+ + PK
Sbjct: 45 KNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPK 104
Query: 426 SVKFCNCL 449
K L
Sbjct: 105 IRKVLRLL 112
Score = 60.1 bits (139), Expect = 3e-10
Identities = 24/40 (60%), Positives = 33/40 (82%)
Frame = +1
Query: 502 EYVRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 621
+ +RI EPY+ +G PNL SVREL+YKRGF K++GQRI ++
Sbjct: 131 QMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALS 170
Score = 56.4 bits (130), Expect = 4e-09
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLTLLGDTPT*RVSVS*YTNVDSPS*V 601
++RKVL+L RL +INN VFVR NKA M ++ P SV +
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLH-SVRELIYKRGFGKI 162
Query: 602 DNVYQSLS-NSIVEKRLHKHNIICVEDLIHEIFTVG 706
+ +LS N+++E+ L K+++I +ED+IHEI+ VG
Sbjct: 163 NGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVG 198
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 29.1 bits (62), Expect = 0.65
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +2
Query: 476 FVRLNKATVNMYVSPSLTLLGDTPT*RVSVS*YTNVDSPS*VDNVYQSLSNSIVEKRLH 652
FV+ K V Y SL +LGD +SVS T++D+P V + S+ NS +L+
Sbjct: 562 FVKSIKKQVVNYTESSLAMLGDLL--NISVSPVTDMDAP--VPTLNSSIRNSDFNSQLY 616
>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 90
Score = 28.7 bits (61), Expect = 0.86
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 222 AKEAFFCHQEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 353
AKE FF HQ E E ++ ++ +K +R +E DE+ + + N
Sbjct: 47 AKEDFFVHQHEIEQLRKLKESLKLHR-EELDELESRVDKKMKSN 89
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 308 FLDAVFLDVLFSPLEDFPFFLMAEERLFSVTC 213
FL +V+ + S +ED+ L E+++FSV C
Sbjct: 1092 FLQSVYSSLSESQVEDYQMELFREKQIFSVLC 1123
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +3
Query: 270 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 371
+A Q ++ + +RL N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 587 SPS*VDNVYQSLSNSIVEKRLHKHNIICVEDLIHEIF 697
+PS +V++ N V + LH+H + + +L HE++
Sbjct: 324 TPSIRSHVFKPPFNLKVLQLLHEHGLASIPELKHELY 360
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 581 VDSPS*VDNVYQSLSNSIVEKRLHKHN 661
V S + N Y+S NS++ K + KHN
Sbjct: 225 VKKRSDLGNKYESTLNSLINKSVKKHN 251
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,505
Number of Sequences: 5004
Number of extensions: 56811
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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