Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30559.Seq
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 71 1e-12
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 70 2e-12
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 47 1e-05
08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,748... 29 2.7
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 29 3.6
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 29 3.6
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 28 8.4
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 70.5 bits (165), Expect = 1e-12
Identities = 32/68 (47%), Positives = 47/68 (69%)
Frame = +3
Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
+ + IF RA+QY +EY +E++ ++L R+AR +G +YV EAKL FV+RIRGIN + PK
Sbjct: 42 ESRKLIFARAKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPK 101
Query: 426 SVKFCNCL 449
+ K L
Sbjct: 102 TRKILQLL 109
Score = 68.9 bits (161), Expect = 4e-12
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMY--VSPSLTLLGDTPT*RVSVS*YTNVDSPS 595
+ RK+LQL RLRQI NGVF+++NKAT+NM V P + G V Y
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVA-YGYPNLKSVRELIYKRGYGKL 159
Query: 596 *VDNVYQSLSNSIVEKRLHKHNIICVEDLIHEIFTVG 706
+ +N ++E+ L KH+IIC+EDL+HEI TVG
Sbjct: 160 NKQRI-PLQNNKVIEEGLGKHDIICIEDLVHEIMTVG 195
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/37 (70%), Positives = 33/37 (89%)
Frame = +1
Query: 508 VRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPI 618
+R EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+
Sbjct: 130 LRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPL 166
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/68 (45%), Positives = 46/68 (67%)
Frame = +3
Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
+ + IF RA+QY +EY +E++ ++L R+AR +G +YV E KL FV+RIRGIN + PK
Sbjct: 41 ESRKLIFSRAKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPK 100
Query: 426 SVKFCNCL 449
+ K L
Sbjct: 101 TRKILQLL 108
Score = 65.7 bits (153), Expect = 3e-11
Identities = 27/38 (71%), Positives = 34/38 (89%)
Frame = +1
Query: 508 VRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 621
+R EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+T
Sbjct: 129 LRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLT 166
Score = 61.3 bits (142), Expect = 7e-10
Identities = 42/103 (40%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMY--VSPSLTLLGDTPT*RVSVS*YTNVDSPS 595
+ RK+LQL RLRQI NGVF+++NKAT+NM V P + G V Y
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVA-YGYPNLKSVRELIYKRGYGKL 158
Query: 596 *VDNVYQSLSNSIVEKR------LHKHNIICVEDLIHEIFTVG 706
+ +N ++E+ L KH+IIC+EDL+HEI TVG
Sbjct: 159 NKQRI-PLTNNKVIEESWCLYQGLGKHDIICIEDLVHEIMTVG 200
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 47.2 bits (107), Expect = 1e-05
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Frame = +2
Query: 425 VRKVLQLFRLRQINNGVFVRLNKATVN--MYVSPSLTLLGDTPT*RVSVS*YTNVDSPS* 598
+R++L+ RL Q+ GVF++ AT+ + V P +T P + +V
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITY--GFPNLK-NVKDLIYKKGRGF 160
Query: 599 VDNV-YQSLSNSIVEKRLHKHNIICVEDLIHEIFTVG 706
+D + SN ++EK L ++ IIC+EDL+HEI +VG
Sbjct: 161 LDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVG 197
Score = 44.8 bits (101), Expect = 7e-05
Identities = 16/36 (44%), Positives = 27/36 (75%)
Frame = +1
Query: 514 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 621
+ EP+I +G+PNLK+V++L+YK+G L + P+T
Sbjct: 134 VVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLT 169
>08_01_0774 +
7482311-7482919,7484012-7484077,7484211-7484384,
7484473-7484603,7484726-7484802,7484981-7485064,
7487885-7488066,7488189-7488266,7489813-7489945,
7491610-7491670,7491861-7491942,7492143-7492271,
7492510-7492653,7493102-7493204,7493382-7493513,
7494127-7494485,7495149-7495229,7495384-7495450,
7495636-7495706,7496087-7496178,7496365-7496458,
7497692-7497789,7498206-7498341,7498599-7498618,
7498781-7498876,7498973-7499060,7499171-7499288,
7499738-7499759,7500203-7500326,7500625-7500702,
7500837-7500955,7501816-7501869,7502260-7502362,
7503133-7503261,7503345-7503453,7503788-7503819
Length = 1424
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 553 LSWGIPKQCKARRYVHIHSSLIQTY 479
+ WG+P + YVH HS L+++Y
Sbjct: 864 MQWGLPITSMSMVYVHTHSLLLESY 888
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 559 HSLSWGIPKQCKARRYVHIHSSLIQTYKHTIV 464
H +W I K CK+ + IH + KH I+
Sbjct: 89 HDFTWLIDKYCKSLSELKIHHKIANDIKHDII 120
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 183 EERGSSH*EITGYAKEAFFCHQEEREIFKRAEQYVKEYRIKERDEIRLARQARNRG 350
+ RG +H EIT +A ++R + ++ V RIKER E R + +RG
Sbjct: 193 KSRGGNHGEITARDGDATIQESQKRPGKRWIDEPVGNDRIKERSERRTDGKRNSRG 248
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 525 LHCLGIPQLKECP*VSIQTWIRQAEW 602
LHC G+PQ+K +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,023,680
Number of Sequences: 37544
Number of extensions: 356789
Number of successful extensions: 892
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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