Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30559.Seq
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)       93   2e-19
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15)                 29   3.7  
SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)                   28   6.5  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    28   8.5  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 44/69 (63%), Positives = 53/69 (76%)
 Frame = +3

Query: 243 HQEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSP 422
           H + +EIFKRAE+YVKEYR KE DE+R+ + A+  GN+YVP EA+LAFVIRIRGIN VSP
Sbjct: 41  HGKRKEIFKRAEKYVKEYRQKEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSP 100

Query: 423 KSVKFCNCL 449
           K  K    L
Sbjct: 101 KVRKILQLL 109



 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 55/96 (57%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
 Frame = +2

Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLTLLGDTPT*RVSVS*YTNVDSPS*V 601
           +VRK+LQL RLRQINNGVFVRLNKAT NM       +    P  + SV           V
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYPNLK-SVRELIYKRGYGKV 159

Query: 602 DNVYQSLS-NSIVEKRLHKHNIICVEDLIHEIFTVG 706
           D    +L+ NSIVEK L KH IICVEDLIHEIFTVG
Sbjct: 160 DKQRVALTDNSIVEKVLGKHGIICVEDLIHEIFTVG 195



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 25/38 (65%), Positives = 33/38 (86%)
 Frame = +1

Query: 508 VRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 621
           +RI +PYIA+GYPNLKSVREL+YKRG+ K+  QR+ +T
Sbjct: 130 LRIVQPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALT 167


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 328 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV*TAPNK 465
           PDK A+  TTT P   +   ++     T + R P  S T+ T P K
Sbjct: 363 PDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTISTQPKK 408


>SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15)
          Length = 458

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 22/72 (30%), Positives = 36/72 (50%)
 Frame = +1

Query: 232 RSSAIKKKGKSSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVST 411
           +++A  K   ++ G + TSR+T       S    K A   T +   +P+W L+S + VS 
Sbjct: 155 KTTASIKNVPTTNGPSKTSRSTDGEESAGSTHTKKPAKDDTDSSADEPDWDLTS-AFVSR 213

Query: 412 KFHRSP*SSATV 447
              R+P S+ TV
Sbjct: 214 AAGRNPTSTTTV 225


>SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)
          Length = 290

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 550 SWGIPKQCKARRYVHIHSSLIQTYKHTIVY 461
           S  IP++C+    +HIH  L+   KH   Y
Sbjct: 115 SESIPEECEEAPPLHIHDLLLSLQKHLFAY 144


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 303 KERDEIRLARQARNRGNYYVP 365
           K RD   +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,230,248
Number of Sequences: 59808
Number of extensions: 432206
Number of successful extensions: 1006
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)