Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30559.Seq
(708 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 77 9e-15
U41106-1|AAA82409.1| 347|Caenorhabditis elegans Hypothetical pr... 33 0.26
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 31 1.1
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 31 1.1
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 31 1.1
Z68114-4|CAA92159.1| 324|Caenorhabditis elegans Hypothetical pr... 29 3.3
U80836-2|AAV58890.1| 454|Caenorhabditis elegans Abnormal catech... 29 3.3
U80836-1|AAV58889.1| 393|Caenorhabditis elegans Abnormal catech... 29 3.3
AF067940-8|AAC19200.1| 518|Caenorhabditis elegans Hypothetical ... 29 4.3
AL032665-1|CAA21771.1| 294|Caenorhabditis elegans Hypothetical ... 28 7.5
Z81470-6|CAB03884.1| 104|Caenorhabditis elegans Hypothetical pr... 27 9.9
>AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7 protein.
Length = 244
Score = 77.4 bits (182), Expect = 9e-15
Identities = 33/63 (52%), Positives = 50/63 (79%)
Frame = +3
Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
+++ + FKRAE+YV+EYR +++ +RL R+A +G++YVP E K+AFV+RIRGINQ+ PK
Sbjct: 41 EKKTQYFKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPK 100
Query: 426 SVK 434
K
Sbjct: 101 PRK 103
Score = 66.1 bits (154), Expect = 2e-11
Identities = 41/93 (44%), Positives = 50/93 (53%)
Frame = +2
Query: 428 RKVLQLFRLRQINNGVFVRLNKATVNMYVSPSLTLLGDTPT*RVSVS*YTNVDSPS*VDN 607
RK LQ+ RLRQINNGVFV+LNKAT+ + + P + N
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGN 161
Query: 608 VYQSLSNSIVEKRLHKHNIICVEDLIHEIFTVG 706
N+IVE+ L K NIIC+EDL HEI TVG
Sbjct: 162 RVPITDNTIVEQSLGKFNIICLEDLAHEIATVG 194
Score = 64.9 bits (151), Expect = 5e-11
Identities = 24/38 (63%), Positives = 33/38 (86%)
Frame = +1
Query: 508 VRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 621
+RI EPY+AWGYPN K++ +L+YKRG+AK+ G R+PIT
Sbjct: 129 LRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPIT 166
>U41106-1|AAA82409.1| 347|Caenorhabditis elegans Hypothetical
protein W06A11.4 protein.
Length = 347
Score = 32.7 bits (71), Expect = 0.26
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +1
Query: 247 KKKGKSSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 426
KK+ K SR SR ASR +K K A +T P +PN + S S S ++ +
Sbjct: 21 KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRYASN 80
Query: 427 P*SSATV*TAP 459
S + + P
Sbjct: 81 RSSQVKIRSVP 91
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
C05C12.3 protein.
Length = 1694
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 356 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN--KATVNMYVSP 520
L R Q+ PW P FT + V+ LF+L + ++ +F R N ++ +++SP
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKNLFDQSLKLFLSP 1402
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 356 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN--KATVNMYVSP 520
L R Q+ PW P FT + V+ LF+L + ++ +F R N ++ +++SP
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKNLFDQSLKLFLSP 1402
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 356 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN--KATVNMYVSP 520
L R Q+ PW P FT + V+ LF+L + ++ +F R N ++ +++SP
Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKNLFDQSLKLFLSP 1389
>Z68114-4|CAA92159.1| 324|Caenorhabditis elegans Hypothetical
protein F17A2.6 protein.
Length = 324
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 538 PKQCKARRYVHIHSSLIQTYKHTIVYLAQSKQLQNFTDFGETW 410
PKQ + RY+ +++ + Q + YL Q +Q+ N E W
Sbjct: 38 PKQLQTLRYILVNTCVFQVIHVSACYLMQFRQVSNLVPM-EVW 79
>U80836-2|AAV58890.1| 454|Caenorhabditis elegans Abnormal
catecholamine distributionprotein 2, isoform b protein.
Length = 454
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = -3
Query: 649 EPLLNNAVGK*LVYVVHSAWRIHVC-ILTHGHSLSWGIPKQCKARRYVHIHSSLIQTYKH 473
+P L+N V L + S+ ++ +C + T G+ S + CKA + IHS+ + T H
Sbjct: 37 DPTLSNFVSDILQNM--SSAKVQICHVETRGNEASHDVLLACKATKNQLIHSAELLTQNH 94
Query: 472 TIV--YLAQSKQLQNFTDFGETWLIPR 398
+ + +K+L + + + W PR
Sbjct: 95 VALTKFSIFAKKLSDEKNQSQIW-FPR 120
>U80836-1|AAV58889.1| 393|Caenorhabditis elegans Abnormal
catecholamine distributionprotein 2, isoform a protein.
Length = 393
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = -3
Query: 649 EPLLNNAVGK*LVYVVHSAWRIHVC-ILTHGHSLSWGIPKQCKARRYVHIHSSLIQTYKH 473
+P L+N V L + S+ ++ +C + T G+ S + CKA + IHS+ + T H
Sbjct: 107 DPTLSNFVSDILQNM--SSAKVQICHVETRGNEASHDVLLACKATKNQLIHSAELLTQNH 164
Query: 472 TIV--YLAQSKQLQNFTDFGETWLIPR 398
+ + +K+L + + + W PR
Sbjct: 165 VALTKFSIFAKKLSDEKNQSQIW-FPR 190
>AF067940-8|AAC19200.1| 518|Caenorhabditis elegans Hypothetical
protein F36F12.1 protein.
Length = 518
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 347 WQLLRSRGSQIGICHPNPWYQPSFTEV-RKVLQLFRLRQINN 469
+Q++R G Q+GI PW P F++V R L+ R ++ N
Sbjct: 210 YQMVRELG-QLGIVTTQPWLTPKFSQVARPFLEPSRNSELRN 250
>AL032665-1|CAA21771.1| 294|Caenorhabditis elegans Hypothetical
protein Y76A2A.1 protein.
Length = 294
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +1
Query: 220 TLKRRSSAIKKKGKSSRGLNSTSRNTASRNVMK---SD*PDKHAIVATTTF 363
T K S + K+KGKSS+ +S+S+ T SR ++ D P+K TF
Sbjct: 57 TAKENSQSSKRKGKSSK-KSSSSKKTRSRLSIRRTLRDDPNKEMKATLLTF 106
>Z81470-6|CAB03884.1| 104|Caenorhabditis elegans Hypothetical
protein C14A6.7 protein.
Length = 104
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 219 YAKEAFFCHQEEREIFKRAEQYVKEYRIKERDEIRLARQARN 344
Y EA H++ RE+ K AE+Y E I + + + +RN
Sbjct: 33 YTAEASGNHKKARELLKNAEKYEAEAEIIHEEIAQSWKASRN 74
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,487,932
Number of Sequences: 27780
Number of extensions: 313232
Number of successful extensions: 841
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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