Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30559.Seq
(708 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 77 1e-14
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 77 1e-14
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 76 2e-14
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 76 3e-14
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 76 3e-14
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 76 3e-14
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 47 1e-05
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 29 3.0
At4g24880.1 68417.m03560 expressed protein 29 4.0
At1g72470.1 68414.m08380 exocyst subunit EXO70 family protein co... 29 4.0
At5g06740.1 68418.m00762 lectin protein kinase family protein co... 27 9.2
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 27 9.2
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/63 (57%), Positives = 45/63 (71%)
Frame = +3
Query: 261 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFC 440
IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K
Sbjct: 49 IFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKIL 108
Query: 441 NCL 449
L
Sbjct: 109 QLL 111
Score = 72.5 bits (170), Expect = 2e-13
Identities = 48/98 (48%), Positives = 63/98 (64%), Gaps = 3/98 (3%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMY--VSPSLTLLGDTPT*RVSVS*YTNVDSPS 595
+ +K+LQL RLRQI NGVF+++NKATVNM V P +T P + SV
Sbjct: 103 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTY--GYPNLK-SVKELIYKRGYG 159
Query: 596 *VDNVYQSLS-NSIVEKRLHKHNIICVEDLIHEIFTVG 706
+++ +L+ NSIV++ L KH IICVEDLIHEI TVG
Sbjct: 160 KLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVG 197
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = +1
Query: 508 VRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 621
+R EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T
Sbjct: 132 LRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALT 169
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/63 (57%), Positives = 45/63 (71%)
Frame = +3
Query: 261 IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFC 440
IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K
Sbjct: 44 IFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKIL 103
Query: 441 NCL 449
L
Sbjct: 104 QLL 106
Score = 72.5 bits (170), Expect = 2e-13
Identities = 48/98 (48%), Positives = 63/98 (64%), Gaps = 3/98 (3%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMY--VSPSLTLLGDTPT*RVSVS*YTNVDSPS 595
+ +K+LQL RLRQI NGVF+++NKATVNM V P +T P + SV
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTY--GYPNLK-SVKELIYKRGYG 154
Query: 596 *VDNVYQSLS-NSIVEKRLHKHNIICVEDLIHEIFTVG 706
+++ +L+ NSIV++ L KH IICVEDLIHEI TVG
Sbjct: 155 KLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVG 192
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = +1
Query: 508 VRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 621
+R EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T
Sbjct: 127 LRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALT 164
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/68 (52%), Positives = 47/68 (69%)
Frame = +3
Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
+ + IFKRAEQY KEY KE++ I L R+A+ +G +YV EAKL F+IRIRGIN + PK
Sbjct: 39 ENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 98
Query: 426 SVKFCNCL 449
+ K L
Sbjct: 99 TKKILQLL 106
Score = 70.9 bits (166), Expect = 8e-13
Identities = 47/98 (47%), Positives = 62/98 (63%), Gaps = 3/98 (3%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMY--VSPSLTLLGDTPT*RVSVS*YTNVDSPS 595
+ +K+LQL RLRQI NGVF+++NKAT+NM V P +T P + SV
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTY--GFPNLK-SVKELIYKRGYG 154
Query: 596 *VDNVYQSLS-NSIVEKRLHKHNIICVEDLIHEIFTVG 706
+++ +L+ NSIVE+ L KH IIC EDLIHEI TVG
Sbjct: 155 KLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVG 192
Score = 58.0 bits (134), Expect = 6e-09
Identities = 23/38 (60%), Positives = 32/38 (84%)
Frame = +1
Query: 508 VRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 621
+R EPY+ +G+PNLKSV+EL+YKRG+ KL+ QRI +T
Sbjct: 127 LRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALT 164
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/68 (51%), Positives = 49/68 (72%)
Frame = +3
Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
++ + IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100
Query: 426 SVKFCNCL 449
+ K L
Sbjct: 101 TKKILQLL 108
Score = 72.1 bits (169), Expect = 3e-13
Identities = 47/98 (47%), Positives = 63/98 (64%), Gaps = 3/98 (3%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMY--VSPSLTLLGDTPT*RVSVS*YTNVDSPS 595
+ +K+LQL RLRQI NGVF+++NKAT+NM V P +T P + SV
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTY--GYPNLK-SVKELIYKRGFG 156
Query: 596 *VDNVYQSLS-NSIVEKRLHKHNIICVEDLIHEIFTVG 706
+++ +L+ NSIV++ L KH IICVEDLIHEI TVG
Sbjct: 157 KLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVG 194
Score = 58.8 bits (136), Expect = 3e-09
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = +1
Query: 508 VRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 621
+R EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T
Sbjct: 129 LRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALT 166
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/68 (51%), Positives = 49/68 (72%)
Frame = +3
Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
++ + IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100
Query: 426 SVKFCNCL 449
+ K L
Sbjct: 101 TKKILQLL 108
Score = 72.1 bits (169), Expect = 3e-13
Identities = 47/98 (47%), Positives = 63/98 (64%), Gaps = 3/98 (3%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMY--VSPSLTLLGDTPT*RVSVS*YTNVDSPS 595
+ +K+LQL RLRQI NGVF+++NKAT+NM V P +T P + SV
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTY--GYPNLK-SVKELIYKRGFG 156
Query: 596 *VDNVYQSLS-NSIVEKRLHKHNIICVEDLIHEIFTVG 706
+++ +L+ NSIV++ L KH IICVEDLIHEI TVG
Sbjct: 157 KLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVG 194
Score = 58.8 bits (136), Expect = 3e-09
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = +1
Query: 508 VRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 621
+R EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T
Sbjct: 129 LRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALT 166
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/68 (51%), Positives = 49/68 (72%)
Frame = +3
Query: 246 QEEREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 425
++ + IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100
Query: 426 SVKFCNCL 449
+ K L
Sbjct: 101 TKKILQLL 108
Score = 72.1 bits (169), Expect = 3e-13
Identities = 47/98 (47%), Positives = 63/98 (64%), Gaps = 3/98 (3%)
Frame = +2
Query: 422 EVRKVLQLFRLRQINNGVFVRLNKATVNMY--VSPSLTLLGDTPT*RVSVS*YTNVDSPS 595
+ +K+LQL RLRQI NGVF+++NKAT+NM V P +T P + SV
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTY--GYPNLK-SVKELIYKRGFG 156
Query: 596 *VDNVYQSLS-NSIVEKRLHKHNIICVEDLIHEIFTVG 706
+++ +L+ NSIV++ L KH IICVEDLIHEI TVG
Sbjct: 157 KLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVG 194
Score = 58.8 bits (136), Expect = 3e-09
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = +1
Query: 508 VRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 621
+R EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T
Sbjct: 129 LRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALT 166
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +3
Query: 267 KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNC 446
KR E +V E+R KE D IR+ ++ + + P ++ L F+IRI+G N + PK+ + N
Sbjct: 50 KRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNN 109
Query: 447 L 449
L
Sbjct: 110 L 110
Score = 46.4 bits (105), Expect = 2e-05
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +1
Query: 520 EPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPIT 621
+PY+ +GYPN KSV++L+YK+G + G +P+T
Sbjct: 135 QPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLT 168
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +2
Query: 626 NSIVEKRLHKHNIICVEDLIHEIFTVG 706
N+I+E+ L +H I+ +EDL++EI VG
Sbjct: 170 NNIIEQALGEHKILGIEDLVNEIARVG 196
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +1
Query: 271 GLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 426
G + T R+ +R + SD K+ V+ T GK HLS E VS F RS
Sbjct: 407 GASVTPRSIKARRALLSD---KNEKVSVTERNGKLGTHLSDEISVSEGFRRS 455
>At4g24880.1 68417.m03560 expressed protein
Length = 417
Score = 28.7 bits (61), Expect = 4.0
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -1
Query: 669 QIMLCLWSLFSTMLLESDWYTLSTQLGESTFVY*LTDTL*VGVSPSNVRLGDT-YIFTVA 493
Q+ML W + L DWY L+ G+ FV +D G + S VR G T ++F A
Sbjct: 99 QLMLPEWMIDVPDNLSQDWYVLARPAGKRCFVV-SSD----GTTVSRVRNGSTLHLFPSA 153
Query: 492 L 490
L
Sbjct: 154 L 154
>At1g72470.1 68414.m08380 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit;
Length = 633
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 517 RYVHIHSSLIQTYKHTIVYLAQSKQLQNFTD 425
RYV + SLI Y+ T++ L SK +N TD
Sbjct: 387 RYVMNYISLISEYRPTLIDLIMSKPSRNATD 417
>At5g06740.1 68418.m00762 lectin protein kinase family protein
contains Legume lectins beta-chain signature,
PROSITE:PS00307 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 652
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 377 IGICHPNPWYQPSFTEVRKVL 439
+ CHPNP +PS V KVL
Sbjct: 586 LACCHPNPNQRPSMKTVLKVL 606
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 454 QSKQLQNFTDF-GETWLIPRIRMTNANLASPGT 359
+ KQL+ + G TW+ P I +N ++ SPGT
Sbjct: 126 ERKQLRTHLIWTGGTWIQPEIEESNKSMFSPGT 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,635,946
Number of Sequences: 28952
Number of extensions: 293007
Number of successful extensions: 770
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -