Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30558.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19390.1 68415.m02262 expressed protein                             29   3.9  
At2g30280.1 68415.m03686 expressed protein                             27   9.0  
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami...    27   9.0  

>At2g19390.1 68415.m02262 expressed protein
          Length = 1211

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 296 ASADSDRRNIVSRSRERNSVLNVKKLNVRKMN 391
           A  DSD  ++ S  RER+ V + +++N+R +N
Sbjct: 345 ARVDSDHNSLYSEKRERSIVSDKERVNLRGVN 376


>At2g30280.1 68415.m03686 expressed protein
          Length = 346

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 113 RSDREKPKRSTKSNERRRSPREVLSFSKIWKER 211
           + D  K +R TKS ++++   E   F +IW+ R
Sbjct: 118 KKDNRKEQRLTKSVQKQQIASENARFEQIWRSR 150


>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
           protein contains Pfam profile PF00383: Cytidine and
           deoxycytidylate deaminase zinc-binding region
          Length = 1307

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 305 DSDRR-NIVSRSRERNSVLNVKKLNVRKMN 391
           D +R+ N+VSR +E+  V NV+K++V   N
Sbjct: 155 DEERKWNLVSRVKEKKKVGNVRKVSVEGSN 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,284,143
Number of Sequences: 28952
Number of extensions: 82868
Number of successful extensions: 237
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)