Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30556.Seq
(697 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 175 2e-44
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 175 2e-44
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 154 5e-38
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 146 2e-35
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 139 2e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 113 9e-26
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 113 9e-26
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 108 4e-24
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 69 2e-12
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 69 2e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 66 2e-11
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 66 2e-11
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 66 2e-11
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 41 0.001
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 36 0.037
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 36 0.037
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 35 0.064
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.084
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 34 0.11
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.15
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.26
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.26
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 33 0.26
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.79
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.79
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.4
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.4
AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical ... 29 2.4
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 9.7
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 27 9.7
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 175 bits (427), Expect = 2e-44
Identities = 86/124 (69%), Positives = 94/124 (75%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 437 TREHALLAFTLGVKQLIVGVNKMDPLNHHTVSPDLRKSRRXYPHTSRRLGYNPAAVVSCP 616
TREHALLA TLGVKQLIV NKMD + +++GYNP AV P
Sbjct: 133 TREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVP 192
Query: 617 FSGW 628
SG+
Sbjct: 193 ISGF 196
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERE 246
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 175 bits (427), Expect = 2e-44
Identities = 86/124 (69%), Positives = 94/124 (75%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 437 TREHALLAFTLGVKQLIVGVNKMDPLNHHTVSPDLRKSRRXYPHTSRRLGYNPAAVVSCP 616
TREHALLA TLGVKQLIV NKMD + +++GYNP AV P
Sbjct: 133 TREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVP 192
Query: 617 FSGW 628
SG+
Sbjct: 193 ISGF 196
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERE 246
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 154 bits (374), Expect = 5e-38
Identities = 71/77 (92%), Positives = 75/77 (97%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 437 TREHALLAFTLGVKQLI 487
TREHALLA TLGVKQL+
Sbjct: 133 TREHALLAQTLGVKQLV 149
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERE 246
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 146 bits (353), Expect = 2e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERE 246
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 96.3 bits (229), Expect = 2e-20
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 391
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 50.8 bits (116), Expect = 9e-07
Identities = 26/59 (44%), Positives = 31/59 (52%)
Frame = +1
Query: 508 STEPPYSEPRFEEIKKXVSSYIQKIGLQPSCCRFVPIFWMGTETTCWSLQPKXLGFKGW 684
STEPP+SE RF EI VS +I+KIG P FVPI + + FKGW
Sbjct: 123 STEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNML-EVSSNMPWFKGW 180
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 139 bits (336), Expect = 2e-33
Identities = 63/69 (91%), Positives = 65/69 (94%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 222
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 223 DKLKAERES 249
DKLK + +
Sbjct: 61 DKLKVTKSA 69
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 113 bits (273), Expect = 9e-26
Identities = 53/87 (60%), Positives = 65/87 (74%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQ
Sbjct: 236 MDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQ 295
Query: 437 TREHALLAFTLGVKQLIVGVNKMDPLN 517
T+EHALL +LGV QLIV VNK+D ++
Sbjct: 296 TKEHALLLRSLGVTQLIVAVNKLDTVD 322
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +1
Query: 52 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 231
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 232 KAERE 246
+ ERE
Sbjct: 227 EEERE 231
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 113 bits (273), Expect = 9e-26
Identities = 53/87 (60%), Positives = 65/87 (74%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQ
Sbjct: 254 MDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQ 313
Query: 437 TREHALLAFTLGVKQLIVGVNKMDPLN 517
T+EHALL +LGV QLIV VNK+D ++
Sbjct: 314 TKEHALLLRSLGVTQLIVAVNKLDTVD 340
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +1
Query: 52 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 231
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 232 KAERE 246
+ ERE
Sbjct: 245 EEERE 249
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 108 bits (259), Expect = 4e-24
Identities = 53/124 (42%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + GQ
Sbjct: 175 VEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQ 234
Query: 437 TREHALLAFTLGVKQLIVGVNKMDPLNHHTVSPDLRKSRRXYPHTSRRLGYNPAA-VVSC 613
TREH++L T GVK L++ VNKMD ++ R+LG+NP +
Sbjct: 235 TREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYV 294
Query: 614 PFSG 625
P SG
Sbjct: 295 PCSG 298
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/67 (50%), Positives = 48/67 (71%)
Frame = +1
Query: 46 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 225
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 226 KLKAERE 246
ERE
Sbjct: 164 TNDEERE 170
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 69.3 bits (162), Expect = 2e-12
Identities = 38/84 (45%), Positives = 51/84 (60%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
I++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E Q
Sbjct: 96 INVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------Q 148
Query: 437 TREHALLAFTLGVKQLIVGVNKMD 508
T+EH +LA +GVK + + +NK D
Sbjct: 149 TKEHLILAKQVGVKNMAIFINKAD 172
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 55 KTHINIVVIGHVDSGKSTTT 114
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 69.3 bits (162), Expect = 2e-12
Identities = 38/84 (45%), Positives = 51/84 (60%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
I++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E Q
Sbjct: 96 INVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------Q 148
Query: 437 TREHALLAFTLGVKQLIVGVNKMD 508
T+EH +LA +GVK + + +NK D
Sbjct: 149 TKEHLILAKQVGVKNMAIFINKAD 172
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 55 KTHINIVVIGHVDSGKSTTT 114
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 66.5 bits (155), Expect = 2e-11
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Frame = +2
Query: 275 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 454
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 106 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 158
Query: 455 LAFTLGV--KQLIVGVNKMD 508
LA +GV ++V +NK+D
Sbjct: 159 LARQVGVPLDNIVVFMNKVD 178
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 49 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 219
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 220 LDKLKAER 243
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 66.5 bits (155), Expect = 2e-11
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Frame = +2
Query: 275 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 454
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 455 LAFTLGV--KQLIVGVNKMD 508
LA +GV ++V +NK+D
Sbjct: 160 LARQVGVPLDNIVVFMNKVD 179
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 49 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 219
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 220 LDKLKAER 243
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 66.5 bits (155), Expect = 2e-11
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Frame = +2
Query: 275 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 454
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 455 LAFTLGV--KQLIVGVNKMD 508
LA +GV ++V +NK+D
Sbjct: 160 LARQVGVPLDNIVVFMNKVD 179
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 49 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 219
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 220 LDKLKAER 243
L+ A+R
Sbjct: 106 LEYETAKR 113
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/86 (30%), Positives = 44/86 (51%)
Frame = +2
Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 478
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 479 QLIVGVNKMDPLNHHTVSPDLRKSRR 556
++I+ +NK D +S +K R+
Sbjct: 127 RVIIVLNKCDLAEKSKISESAKKVRK 152
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 64 INIVVIGHVDSGKSTTT 114
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/73 (39%), Positives = 34/73 (46%)
Frame = +2
Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 478
VT +D PGH F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 479 QLIVGVNKMDPLN 517
QL+V VNK+D N
Sbjct: 258 QLVVAVNKIDKPN 270
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 35.5 bits (78), Expect = 0.037
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 239 SVSRYPIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
S+ P+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 183 SIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 35.5 bits (78), Expect = 0.037
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 239 SVSRYPIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
S+ P+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 58 SIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 34.7 bits (76), Expect = 0.064
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 472
Y + +ID PGH DF + + D +L+VAA G QT + LAF
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKN 154
Query: 473 VKQLIVGVNKMD 508
+ Q+I +NK+D
Sbjct: 155 I-QIIPVINKID 165
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 183
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.084
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGI 144
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +2
Query: 296 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 475
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 476 KQLIVGVNKMD 508
L++ NK+D
Sbjct: 182 NHLMILQNKVD 192
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 501 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 373
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGID 147
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 28.3 bits (60), Expect = 5.5
Identities = 23/70 (32%), Positives = 30/70 (42%)
Frame = +2
Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 478
+ IID PGH DF + D AVL++ G G G+ T L + +
Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQSQTFTVNRQLARYNV--- 165
Query: 479 QLIVGVNKMD 508
I VNKMD
Sbjct: 166 PFICFVNKMD 175
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 32.7 bits (71), Expect = 0.26
Identities = 24/77 (31%), Positives = 36/77 (46%)
Frame = +2
Query: 305 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 484
IID PGH F G+S D A+L+V + G+ QT E +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLEP--QTIE-SLKLLIKGKTPF 604
Query: 485 IVGVNKMDPLNHHTVSP 535
++ +NK+D L + +P
Sbjct: 605 VIALNKIDRLYEYESNP 621
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.79
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 19 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 129
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.79
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 19 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 129
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 145 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 145 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical
protein Y102A11A.9 protein.
Length = 332
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 142 IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERESVSNRYCSLEVRN 285
+DK ++ KE E+ K KYA KLK + + V N Y S+ +N
Sbjct: 188 LDKSRVKTASKERNELAK---KYAEQNAKLKLKLKEVKNNYASMLEKN 232
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 64 INIVVIGHVDSGKSTTT 114
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 299 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 394
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 388
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 388
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = -1
Query: 484 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 326
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 325 VSRSINDGNI 296
S S +D I
Sbjct: 84 FSGSKSDAEI 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,252,255
Number of Sequences: 27780
Number of extensions: 346448
Number of successful extensions: 1086
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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