Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30554.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          119   3e-27
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   118   4e-27
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           75   5e-14
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    31   0.67 
09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.5  
10_02_0139 + 5753426-5754841,5755566-5755655,5756011-5756379,575...    28   6.2  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  119 bits (286), Expect = 3e-27
 Identities = 56/71 (78%), Positives = 63/71 (88%)
 Frame = -3

Query: 468 MVRMNVLSDALKSIXNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGXFEIVDDHRAGK 289
           MVR++VL+DALK++ NAEKRGKRQVLIRP SKVI+KFL VM KHGYIG FE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 288 IVVNLTGRLNK 256
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 38/47 (80%), Positives = 41/47 (87%), Gaps = 1/47 (2%)
 Frame = -2

Query: 253 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRK 116
           GVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK
Sbjct: 73  GVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRK 119


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  118 bits (284), Expect = 4e-27
 Identities = 55/71 (77%), Positives = 63/71 (88%)
 Frame = -3

Query: 468 MVRMNVLSDALKSIXNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGXFEIVDDHRAGK 289
           MVR++VL+DALK++ NAEKRGKRQV+IRP SKVI+KFL VM KHGYIG FE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 288 IVVNLTGRLNK 256
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 38/47 (80%), Positives = 41/47 (87%), Gaps = 1/47 (2%)
 Frame = -2

Query: 253 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRK 116
           GVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK
Sbjct: 73  GVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRK 119


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 33/64 (51%), Positives = 46/64 (71%)
 Frame = -3

Query: 453 VLSDALKSIXNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGXFEIVDDHRAGKIVVNL 274
           +L+DAL+++ NAE+RGK   L++P S V+V FL +M   GYI  FE++D HR GKI V L
Sbjct: 5   ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64

Query: 273 TGRL 262
            GR+
Sbjct: 65  HGRI 68



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
 Frame = -2

Query: 274 HRQTKQVGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEA 125
           H + K    ++ R D+   +IE++   +LP+RQ+GY+V+TT  G++DHEEA
Sbjct: 65  HGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEA 115


>01_01_0365 -
           2859617-2859722,2860047-2860489,2862232-2862391,
           2863431-2863516,2863648-2866272
          Length = 1139

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 13/25 (52%), Positives = 20/25 (80%), Gaps = 2/25 (8%)
 Frame = -3

Query: 312 VDDHRAGKIVVNLTGRLNK--LVSF 244
           VDDH++G+I++   GRLNK  ++SF
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISF 936


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 550 ITIHWPSFYNVV-TGKTLALPNLIALQH 630
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>10_02_0139 +
           5753426-5754841,5755566-5755655,5756011-5756379,
           5756796-5756982,5757567-5757631
          Length = 708

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -3

Query: 531 KLGTGPPRNSVRYEARAKSXPMVRMNVLSDAL-KSIXNAEKRGKRQVLIRPCSKVIVKFL 355
           +LG  PP  + RYE +     +  +N  SD+  K++ +   R +R+  IRPC   I +F 
Sbjct: 481 QLGQAPPNRAYRYELKLS---LTTLNFRSDSRGKNVSSQSVRFQRR--IRPCRYDIDQFT 535

Query: 354 TVMM 343
              M
Sbjct: 536 PSFM 539


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,349,549
Number of Sequences: 37544
Number of extensions: 308272
Number of successful extensions: 647
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)