Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30554.Seq
         (698 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           26   0.99 
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    26   0.99 
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    23   7.0  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 26.2 bits (55), Expect = 0.99
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 358 KLNDDFGTGPDEDLSFPSLFS 420
           +L DDF TGPD + + P++FS
Sbjct: 609 ELRDDFPTGPDPNFN-PNIFS 628


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 26.2 bits (55), Expect = 0.99
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 492 EARAKSXPMVRMNVLSDALKSIXNAEKRGKRQVLIRPCSKV 370
           E   +S  +  +N+L+ +      A+KR + Q L+R C K+
Sbjct: 591 EKSTRSDALRTLNLLNRSTDHALLAQKRQEHQRLVRECDKI 631


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 594 NPGVTQLNRLAAHPPFASWRNS 659
           +PG     +L+ HPP AS R+S
Sbjct: 835 HPGAQTQPQLSQHPPGASGRSS 856


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,246
Number of Sequences: 2352
Number of extensions: 10160
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)