Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30554.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy...   119   2e-27
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id...   119   2e-27
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id...   119   2e-27
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy...   117   7e-27
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)         113   1e-25
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)          74   8e-14
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri...    74   1e-13
At4g12540.1 68417.m01979 expressed protein                             29   3.0  
At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative ...    28   5.2  

>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  119 bits (286), Expect = 2e-27
 Identities = 56/71 (78%), Positives = 63/71 (88%)
 Frame = -3

Query: 468 MVRMNVLSDALKSIXNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGXFEIVDDHRAGK 289
           MVR++VL+DALKS+ NAEKRGKRQV+IRP SKVI+KFL VM KHGYIG FE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 288 IVVNLTGRLNK 256
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 38/47 (80%), Positives = 41/47 (87%), Gaps = 1/47 (2%)
 Frame = -2

Query: 253 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRK 116
           GVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK
Sbjct: 73  GVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRK 119


>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  119 bits (286), Expect = 2e-27
 Identities = 56/71 (78%), Positives = 63/71 (88%)
 Frame = -3

Query: 468 MVRMNVLSDALKSIXNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGXFEIVDDHRAGK 289
           MVR++VL+DALKS+ NAEKRGKRQV+IRP SKVI+KFL VM KHGYIG FE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 288 IVVNLTGRLNK 256
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 38/47 (80%), Positives = 41/47 (87%), Gaps = 1/47 (2%)
 Frame = -2

Query: 253 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRK 116
           GVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK
Sbjct: 73  GVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRK 119


>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  119 bits (286), Expect = 2e-27
 Identities = 56/71 (78%), Positives = 63/71 (88%)
 Frame = -3

Query: 468 MVRMNVLSDALKSIXNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGXFEIVDDHRAGK 289
           MVR++VL+DALKS+ NAEKRGKRQV+IRP SKVI+KFL VM KHGYIG FE VDDHR+GK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 288 IVVNLTGRLNK 256
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 38/47 (80%), Positives = 41/47 (87%), Gaps = 1/47 (2%)
 Frame = -2

Query: 253 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRK 116
           GVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK
Sbjct: 73  GVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRK 119


>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  117 bits (282), Expect = 7e-27
 Identities = 55/71 (77%), Positives = 62/71 (87%)
 Frame = -3

Query: 468 MVRMNVLSDALKSIXNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGXFEIVDDHRAGK 289
           MVR++VL+D LKS+ NAEKRGKRQV+IRP SKVI+KFL VM KHGYIG FE VDDHR+GK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 288 IVVNLTGRLNK 256
           IVV L GRLNK
Sbjct: 61  IVVELNGRLNK 71



 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 37/47 (78%), Positives = 41/47 (87%), Gaps = 1/47 (2%)
 Frame = -2

Query: 253 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRK 116
           GVISPRFDV + +IE WT  LLPSRQFG++VLTTS GIMDHEEARRK
Sbjct: 73  GVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRK 119


>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 
          Length = 136

 Score =  113 bits (271), Expect = 1e-25
 Identities = 53/70 (75%), Positives = 60/70 (85%)
 Frame = -3

Query: 468 MVRMNVLSDALKSIXNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGXFEIVDDHRAGK 289
           MVR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI  FE VDDHR+GK
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 288 IVVNLTGRLN 259
           IVV L GRLN
Sbjct: 67  IVVELNGRLN 76



 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 35/47 (74%), Positives = 41/47 (87%), Gaps = 1/47 (2%)
 Frame = -2

Query: 253 GVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRK 116
           GVISPR+D+ + +IE WT  LLPSRQFGY+VLTTS GIMDHEEAR+K
Sbjct: 79  GVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKK 125


>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 
          Length = 129

 Score = 74.1 bits (174), Expect = 8e-14
 Identities = 33/65 (50%), Positives = 47/65 (72%)
 Frame = -3

Query: 453 VLSDALKSIXNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGXFEIVDDHRAGKIVVNL 274
           +L+DAL++I NAEKRGK  V ++P S V+  FL +M + GYI  F++ D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64

Query: 273 TGRLN 259
            GR+N
Sbjct: 65  QGRVN 69



 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 22/42 (52%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
 Frame = -2

Query: 238 RFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRK 116
           R DV  N+I ++T   LP+RQ+GY+V+TT  GI+DHEEA ++
Sbjct: 77  RQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKR 118


>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
           ribosomal protein S15a - Brassica napus,PIR2:S20945
          Length = 129

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 32/65 (49%), Positives = 47/65 (72%)
 Frame = -3

Query: 453 VLSDALKSIXNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGXFEIVDDHRAGKIVVNL 274
           +L+DAL++I NAE+RGK  V ++P S V+  FL +M + GYI  F++ D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64

Query: 273 TGRLN 259
            GR+N
Sbjct: 65  QGRVN 69



 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 22/42 (52%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
 Frame = -2

Query: 238 RFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRK 116
           R DV   +IE++T   LP+RQ+GY+V+TT  GI+DHEEA ++
Sbjct: 77  RQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKR 118


>At4g12540.1 68417.m01979 expressed protein 
          Length = 461

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
 Frame = +3

Query: 585 DXENPGVTQLNRLAAHPPFASWR---NSEKGPQRF--GPFPTG 698
           D E+P  TQ   L +  P   WR   N++KG Q F   P P G
Sbjct: 134 DVESPEPTQFEPLVSPSPLVHWRGDHNADKGRQLFLLTPLPLG 176


>At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative
           similar to DNA-binding protein DF1 [Pisum sativum]
           GI:13646986
          Length = 603

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 221 DGNIKTRXNDTNLFSLPVRFTTILPAL*SSTI 316
           + N     N++++FS P   TT++P L SS+I
Sbjct: 169 NNNNNNNNNNSSIFSTPPPVTTVMPTLPSSSI 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,634,536
Number of Sequences: 28952
Number of extensions: 231176
Number of successful extensions: 447
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)