Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30552.Seq
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ...   137   7e-33
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ...   132   1e-31
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)           132   1e-31
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote...    27   7.8  

>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
           RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
           PIR:T45883
          Length = 166

 Score =  137 bits (331), Expect = 7e-33
 Identities = 65/85 (76%), Positives = 77/85 (90%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQXNIKHNGNISLEDVI 431
           K+WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK  NIKHNGNIS +DVI
Sbjct: 52  KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVI 111

Query: 432 GIAKIMRNRSMARYLSGSVKEILGT 506
            IAKIMR RS+A+ LSG+VKEILGT
Sbjct: 112 EIAKIMRPRSIAKELSGTVKEILGT 136



 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 36/50 (72%), Positives = 41/50 (82%)
 Frame = +1

Query: 103 MPPKFDPNXIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT 252
           MPPK DP+ I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50



 Score = 35.5 bits (78), Expect = 0.030
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +2

Query: 512 SVGCTVEGRPPHDLIDDINSG 574
           SVGCTV+G+ P DL ++INSG
Sbjct: 139 SVGCTVDGKDPKDLQEEINSG 159


>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
           RIBOSOMAL PROTEIN L12, Prunus armeniaca,
           SWISSPROT:RL12_PRUAR
          Length = 166

 Score =  132 bits (320), Expect = 1e-31
 Identities = 62/85 (72%), Positives = 76/85 (89%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQXNIKHNGNISLEDVI 431
           K+WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK  NIKHNGNIS +DV 
Sbjct: 52  KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVT 111

Query: 432 GIAKIMRNRSMARYLSGSVKEILGT 506
            IA+IMR RS+A+ LSG+V+EILGT
Sbjct: 112 EIARIMRPRSIAKELSGTVREILGT 136



 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 36/50 (72%), Positives = 41/50 (82%)
 Frame = +1

Query: 103 MPPKFDPNXIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT 252
           MPPK DP+ I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50



 Score = 30.7 bits (66), Expect = 0.84
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 512 SVGCTVEGRPPHDLIDDINSG 574
           SVGCTV+G+ P DL  +I  G
Sbjct: 139 SVGCTVDGKDPKDLQQEIQEG 159


>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
          Length = 166

 Score =  132 bits (320), Expect = 1e-31
 Identities = 62/85 (72%), Positives = 76/85 (89%)
 Frame = +3

Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQXNIKHNGNISLEDVI 431
           K+WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK  NIKHNGNIS +DV 
Sbjct: 52  KEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVT 111

Query: 432 GIAKIMRNRSMARYLSGSVKEILGT 506
            IA+IMR RS+A+ LSG+V+EILGT
Sbjct: 112 EIARIMRPRSIAKELSGTVREILGT 136



 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 36/50 (72%), Positives = 41/50 (82%)
 Frame = +1

Query: 103 MPPKFDPNXIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT 252
           MPPK DP+ I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKET 50



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 512 SVGCTVEGRPPHDLIDDINSG 574
           SVGCTV+G+ P D+  +I  G
Sbjct: 139 SVGCTVDGKDPKDIQQEIQDG 159


>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21 receptor type
           precursor, Oryza sativa, PIR:A57676
          Length = 1025

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = -3

Query: 481 PERYRAIDLFLMIFAMPITSSREMLPLCLIFXCFLRSRGGSLRA 350
           P R+ ++   + I    + ++  +L LC+++ C+ + R  S+RA
Sbjct: 645 PRRHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLRVKSVRA 688


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,899,196
Number of Sequences: 28952
Number of extensions: 290829
Number of successful extensions: 702
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)