Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30547.Seq
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    60   4e-10
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    33   0.033
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   3.8  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    26   5.0  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   6.6  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 28/58 (48%), Positives = 39/58 (67%)
 Frame = -1

Query: 502 QDLIPISLTLLIVGRDIALVVAGFVIRYISLPPPRTLSRYFDVTHATAQLAPTFISKV 329
           ++ +P++L  LI+GRD+ LV A   +RY SLP P+T  R+FD    T +L PT ISKV
Sbjct: 478 RETMPLTLASLIIGRDVLLVSAVSYLRYKSLPAPKTFRRFFDFAIPTTELKPTRISKV 535



 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 30/79 (37%), Positives = 42/79 (53%)
 Frame = -2

Query: 735 PNHLYVSPGMAMSPYLGYVITXNNYNLALGLLVSAGITDLLDGWIARNWKGQSTKMGSFL 556
           PN L  S  +  +P + Y+   +    A    + AG TDL+DG+IAR +   S   G+ L
Sbjct: 402 PNLLTFSR-LLSAPLIAYLYIYDYTKAAACFFLYAGFTDLVDGYIARKFDLGSI-AGTVL 459

Query: 555 DPMADKVLVATLFISLLGR 499
           DP+ADK L+  L I L  R
Sbjct: 460 DPLADKTLMTCLTICLAVR 478


>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 33.5 bits (73), Expect = 0.033
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = -2

Query: 621 DLLDGWIARNWKGQSTKMGSFLDPMADKV 535
           D LDG +AR W+G+S+ MG  LD +AD +
Sbjct: 92  DFLDGKVAR-WRGKSSLMGQELDSLADLI 119


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 323  SCSTSIGRHYAGVPSFWLC*SSSLKVLCGITAASTIVSAVSY 198
            S   SI R +A +P      S + ++LCG+ AAS   + + Y
Sbjct: 1240 SLKRSICRRFAVIPKEHDINSGNAEILCGVIAASLYPNILRY 1281


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 584 VNQQRWVLSWIQWQIKFS-*QLSLSLYLAGPHTYFIDTANSW 462
           ++Q RW   W  W + +S   LS+     G   Y +D   SW
Sbjct: 80  IDQSRWSKLWRIWNVGYSWFILSIIGTTVGFAAYMLDIVTSW 121


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 324 VFTLLIKVGASCAVACVTSKYLLNVRGGGKLIYRMTNPATTNAISRPTISS 476
           +F+LL K+G + +  CV        R G   I+++   ATT +I    I+S
Sbjct: 213 IFSLLSKIGPNLSSVCVQYPMPELSRSGLDCIFQLCPNATTISIPANYITS 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,864
Number of Sequences: 5004
Number of extensions: 64051
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)