Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30546.Seq
(407 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q24154 Cluster: 60S ribosomal protein L29; n=12; Endopt... 65 4e-10
UniRef50_A2I402 Cluster: Ribosomal protein L29e-like protein; n=... 64 8e-10
UniRef50_Q92366 Cluster: 60S ribosomal protein L29; n=40; Eukary... 60 1e-08
UniRef50_Q84WM0 Cluster: 60S ribosomal protein L29-2; n=4; Arabi... 59 3e-08
UniRef50_Q0IFR8 Cluster: Putative uncharacterized protein; n=1; ... 58 7e-08
UniRef50_UPI0000F2DCEB Cluster: PREDICTED: similar to ribosomal ... 57 2e-07
UniRef50_P47914 Cluster: 60S ribosomal protein L29; n=251; Eukar... 57 2e-07
UniRef50_UPI0000F2CE67 Cluster: PREDICTED: similar to ribosomal ... 56 4e-07
UniRef50_Q7QPW0 Cluster: GLP_433_2266_2454; n=2; Eukaryota|Rep: ... 51 1e-05
UniRef50_Q5KDL6 Cluster: Ribosomal protein L29.e, cytosolic, put... 50 2e-05
UniRef50_Q4PEG3 Cluster: Putative uncharacterized protein; n=2; ... 50 2e-05
UniRef50_Q4Q178 Cluster: Ribosomal protein L29, putative; n=7; T... 48 7e-05
UniRef50_Q9NAG9 Cluster: Putative uncharacterized protein; n=1; ... 47 1e-04
UniRef50_Q54TW3 Cluster: Ribosomal protein L29; n=1; Dictyosteli... 45 7e-04
UniRef50_A5HW97 Cluster: Putative uncharacterized protein; n=2; ... 44 9e-04
UniRef50_UPI0001552995 Cluster: PREDICTED: similar to ribosomal ... 43 0.002
UniRef50_UPI000049A0F8 Cluster: 60S ribosomal protein L29; n=1; ... 43 0.002
UniRef50_UPI00001CA5CB Cluster: PREDICTED: similar to 60S riboso... 43 0.003
UniRef50_A0CDP3 Cluster: Chromosome undetermined scaffold_17, wh... 42 0.005
UniRef50_A6R574 Cluster: Predicted protein; n=1; Ajellomyces cap... 41 0.008
UniRef50_UPI0000DC0BB6 Cluster: UPI0000DC0BB6 related cluster; n... 40 0.015
UniRef50_Q4Y8Z0 Cluster: Putative uncharacterized protein; n=1; ... 38 0.059
UniRef50_A7RHN0 Cluster: Predicted protein; n=1; Nematostella ve... 36 0.24
UniRef50_A0ZIW5 Cluster: Two-component sensor histidine kinase; ... 36 0.42
UniRef50_UPI0000D9C65B Cluster: PREDICTED: similar to 60S riboso... 35 0.73
UniRef50_A6SNG7 Cluster: Predicted protein; n=1; Botryotinia fuc... 34 0.96
UniRef50_A7RTA1 Cluster: Predicted protein; n=1; Nematostella ve... 33 2.9
UniRef50_UPI0000E46A11 Cluster: PREDICTED: similar to GA13983-PA... 32 5.1
UniRef50_Q7F1T9 Cluster: Putative uncharacterized protein OJ1167... 31 6.8
>UniRef50_Q24154 Cluster: 60S ribosomal protein L29; n=12;
Endopterygota|Rep: 60S ribosomal protein L29 -
Drosophila melanogaster (Fruit fly)
Length = 76
Score = 65.3 bits (152), Expect = 4e-10
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHEPPLAWIQNF*GIKGFARRVT*SQPSNSRGR 344
MAKSKNHTNHNQN+KAHRNGIK+P + RHE L F + +AR+ S+ + + R
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGNLSREESVK-R 59
Query: 345 LREKL-PEKQRPR 380
E++ +K +P+
Sbjct: 60 YNERIASQKGKPK 72
>UniRef50_A2I402 Cluster: Ribosomal protein L29e-like protein; n=2;
Neoptera|Rep: Ribosomal protein L29e-like protein -
Maconellicoccus hirsutus (hibiscus mealybug)
Length = 90
Score = 64.5 bits (150), Expect = 8e-10
Identities = 28/39 (71%), Positives = 31/39 (79%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHEPPLAWIQNF 281
MAKSKNHTNHNQNRK HRNGIKKP++ R+E L Q F
Sbjct: 1 MAKSKNHTNHNQNRKDHRNGIKKPKRYRYESKLGVCQKF 39
Score = 34.7 bits (76), Expect = 0.73
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +2
Query: 236 KEDQARTTLGMDPKFLRNQRFCKKGNLKPAKQL 334
K + + LG+ KFL+NQRF KGNL A+Q+
Sbjct: 25 KRYRYESKLGVCQKFLKNQRFALKGNLSTAEQV 57
>UniRef50_Q92366 Cluster: 60S ribosomal protein L29; n=40;
Eukaryota|Rep: 60S ribosomal protein L29 -
Schizosaccharomyces pombe (Fission yeast)
Length = 61
Score = 60.5 bits (140), Expect = 1e-08
Identities = 24/30 (80%), Positives = 29/30 (96%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAKSKNHTNHNQN+KAHRNGIK+P+K R++
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPQKHRYD 30
>UniRef50_Q84WM0 Cluster: 60S ribosomal protein L29-2; n=4;
Arabidopsis thaliana|Rep: 60S ribosomal protein L29-2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 61
Score = 59.3 bits (137), Expect = 3e-08
Identities = 27/48 (56%), Positives = 33/48 (68%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHEPPLAWIQNF*GIKGFARR 308
MAKSKNHT HNQ+ KAH+NGIKKPR+ RH P F + +AR+
Sbjct: 1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARK 48
Score = 37.5 bits (83), Expect = 0.10
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +2
Query: 257 TLGMDPKFLRNQRFCKKGNLK 319
T GMDPKFLRNQR+ +K N+K
Sbjct: 32 TRGMDPKFLRNQRYARKHNVK 52
>UniRef50_Q0IFR8 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 97
Score = 58.0 bits (134), Expect = 7e-08
Identities = 23/30 (76%), Positives = 28/30 (93%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAKSKNHTNHNQN+KAH+NGI KP++ R+E
Sbjct: 1 MAKSKNHTNHNQNQKAHKNGITKPKRQRNE 30
>UniRef50_UPI0000F2DCEB Cluster: PREDICTED: similar to ribosomal
protein L29,; n=3; Monodelphis domestica|Rep: PREDICTED:
similar to ribosomal protein L29, - Monodelphis
domestica
Length = 407
Score = 56.8 bits (131), Expect = 2e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAKSKNHT HNQ+RK HRNGIKKPR R+E
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYE 30
Score = 33.5 bits (73), Expect = 1.7
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 263 GMDPKFLRNQRFCKKGNLKPAKQL 334
G+DPKFLRN RF KK K K++
Sbjct: 34 GVDPKFLRNMRFAKKHKKKGLKKM 57
>UniRef50_P47914 Cluster: 60S ribosomal protein L29; n=251;
Eukaryota|Rep: 60S ribosomal protein L29 - Homo sapiens
(Human)
Length = 159
Score = 56.8 bits (131), Expect = 2e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAKSKNHT HNQ+RK HRNGIKKPR R+E
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYE 30
Score = 35.9 bits (79), Expect = 0.31
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2
Query: 263 GMDPKFLRNQRFCKKGNLKPAKQL 334
G+DPKFLRN RF KK N K K++
Sbjct: 34 GVDPKFLRNMRFAKKHNKKGLKKM 57
>UniRef50_UPI0000F2CE67 Cluster: PREDICTED: similar to ribosomal
protein L29/cell surface heparin binding protein HIP;
n=4; Monodelphis domestica|Rep: PREDICTED: similar to
ribosomal protein L29/cell surface heparin binding
protein HIP - Monodelphis domestica
Length = 252
Score = 55.6 bits (128), Expect = 4e-07
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 254
MAKSKNHT HNQ+RK HRNGIKKPR ++E
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSLKYE 30
>UniRef50_Q7QPW0 Cluster: GLP_433_2266_2454; n=2; Eukaryota|Rep:
GLP_433_2266_2454 - Giardia lamblia ATCC 50803
Length = 62
Score = 50.8 bits (116), Expect = 1e-05
Identities = 21/29 (72%), Positives = 25/29 (86%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRH 251
MAK KNHT+ NQNRK HRNGIKKP+K+ +
Sbjct: 1 MAKLKNHTSKNQNRKDHRNGIKKPKKSAY 29
>UniRef50_Q5KDL6 Cluster: Ribosomal protein L29.e, cytosolic,
putative; n=1; Filobasidiella neoformans|Rep: Ribosomal
protein L29.e, cytosolic, putative - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 99
Score = 49.6 bits (113), Expect = 2e-05
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 6/52 (11%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRH------EPPLAWIQNF*GIKGFA 302
MAKSKNHT HNQ RKAHRN I++P+ ++ +P + + +N G G+A
Sbjct: 1 MAKSKNHTAHNQTRKAHRNKIQRPKTNKYHSLKGVDPKVGFFRNAKGYVGWA 52
>UniRef50_Q4PEG3 Cluster: Putative uncharacterized protein; n=2;
Eukaryota|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 282
Score = 49.6 bits (113), Expect = 2e-05
Identities = 24/34 (70%), Positives = 26/34 (76%)
Frame = +3
Query: 162 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEPPL 263
+MAKSKN + HNQ RKAHRNGIKKP KT P L
Sbjct: 93 RMAKSKNSSQHNQVRKAHRNGIKKP-KTNKYPSL 125
Score = 32.7 bits (71), Expect = 2.9
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 263 GMDPKFLRNQRFCKKGNLKPAK 328
G+DPKF+RNQR+ K G K K
Sbjct: 127 GVDPKFVRNQRYAKHGTEKALK 148
>UniRef50_Q4Q178 Cluster: Ribosomal protein L29, putative; n=7;
Trypanosomatidae|Rep: Ribosomal protein L29, putative -
Leishmania major
Length = 70
Score = 48.0 bits (109), Expect = 7e-05
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKP 236
MAKSKNHTNHNQ+ K HRNGIK P
Sbjct: 1 MAKSKNHTNHNQSSKNHRNGIKGP 24
>UniRef50_Q9NAG9 Cluster: Putative uncharacterized protein; n=1;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 87
Score = 47.2 bits (107), Expect = 1e-04
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +3
Query: 171 KSKNHTNHNQNRKAHRNGIKKPRK 242
K +NHTNHN+N KAHRNGI KP+K
Sbjct: 14 KPENHTNHNRNNKAHRNGITKPKK 37
>UniRef50_Q54TW3 Cluster: Ribosomal protein L29; n=1; Dictyostelium
discoideum AX4|Rep: Ribosomal protein L29 -
Dictyostelium discoideum AX4
Length = 93
Score = 44.8 bits (101), Expect = 7e-04
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKK 233
MAKSKNH+ H++NRK HRNGIKK
Sbjct: 1 MAKSKNHSTHHKNRKDHRNGIKK 23
>UniRef50_A5HW97 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 167
Score = 44.4 bits (100), Expect = 9e-04
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +3
Query: 171 KSKNHTNHNQNRKAHRNGIKKPR 239
KSKNHTNHNQN AHR GI KP+
Sbjct: 80 KSKNHTNHNQNNTAHRIGITKPK 102
>UniRef50_UPI0001552995 Cluster: PREDICTED: similar to ribosomal
protein; n=2; Mus musculus|Rep: PREDICTED: similar to
ribosomal protein - Mus musculus
Length = 244
Score = 43.2 bits (97), Expect = 0.002
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 168 AKSKNHTNHNQNRKAHRNGIKKPRKTRH 251
AKSKNH HNQ+ K +RNGIKKPR ++
Sbjct: 47 AKSKNHITHNQSCKWYRNGIKKPRSPKN 74
>UniRef50_UPI000049A0F8 Cluster: 60S ribosomal protein L29; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L29 - Entamoeba histolytica HM-1:IMSS
Length = 64
Score = 43.2 bits (97), Expect = 0.002
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRH 251
M+K KN ++HNQ+ KAHRNG KP+K+ +
Sbjct: 1 MSKDKNRSSHNQSHKAHRNGFYKPKKSAY 29
>UniRef50_UPI00001CA5CB Cluster: PREDICTED: similar to 60S ribosomal
protein L29 (P23); n=2; Rattus norvegicus|Rep:
PREDICTED: similar to 60S ribosomal protein L29 (P23) -
Rattus norvegicus
Length = 105
Score = 42.7 bits (96), Expect = 0.003
Identities = 18/27 (66%), Positives = 20/27 (74%)
Frame = +3
Query: 174 SKNHTNHNQNRKAHRNGIKKPRKTRHE 254
SKNHT HNQ K HRNGIKKP R++
Sbjct: 5 SKNHTTHNQFHKWHRNGIKKPWSQRYK 31
>UniRef50_A0CDP3 Cluster: Chromosome undetermined scaffold_17, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_17,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 73
Score = 41.9 bits (94), Expect = 0.005
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHEPPLAWIQNF*GIKGFARRVT*SQPSNSRGR 344
MAKSKN T+H+ RK HRNGIKK R+ Q F + FA + + PS + +
Sbjct: 1 MAKSKNATSHHNARKHHRNGIKKLPNQRYRTLKGCNQRFAKNRRFAIK---NDPSIKKNK 57
Query: 345 -LREKLPEKQRPRNEH 389
+ +L +++ +N H
Sbjct: 58 SVETRLAKRKANKNIH 73
>UniRef50_A6R574 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 176
Score = 41.1 bits (92), Expect = 0.008
Identities = 19/36 (52%), Positives = 21/36 (58%)
Frame = +3
Query: 156 LIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEPPL 263
L+ H+ H NRKAHRNGIKKP KT P L
Sbjct: 109 LLPQTHQNGHSQHTLNRKAHRNGIKKP-KTHRYPSL 143
>UniRef50_UPI0000DC0BB6 Cluster: UPI0000DC0BB6 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0BB6 UniRef100 entry -
Rattus norvegicus
Length = 142
Score = 40.3 bits (90), Expect = 0.015
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +3
Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPR 239
MAKSKNHT H Q++K HRN IKKP+
Sbjct: 17 MAKSKNHTTH-QSQKWHRNSIKKPK 40
>UniRef50_Q4Y8Z0 Cluster: Putative uncharacterized protein; n=1;
Plasmodium chabaudi|Rep: Putative uncharacterized
protein - Plasmodium chabaudi
Length = 59
Score = 38.3 bits (85), Expect = 0.059
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +2
Query: 263 GMDPKFLRNQRFCKKGNLKPAKQL 334
G+DPKF RNQ++C KG +K K+L
Sbjct: 22 GLDPKFFRNQKYCLKGMIKKQKEL 45
Score = 31.5 bits (68), Expect = 6.8
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 201 NRKAHRNGIKKPR 239
NRKAHRNGIKKP+
Sbjct: 1 NRKAHRNGIKKPK 13
>UniRef50_A7RHN0 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 446
Score = 36.3 bits (80), Expect = 0.24
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -1
Query: 338 SRVAWLASGYPSCKTFDSLKILDPCQGWFVPGLPWLFDTISVSFAVLVMIC 186
S + W+ S K + + DP W +PGLP+++ IS+ ++++IC
Sbjct: 166 SSIVWVVSALLDKKWSTNPSLADPAGAW-IPGLPFIYSCISLLGGLMLLIC 215
>UniRef50_A0ZIW5 Cluster: Two-component sensor histidine kinase;
n=1; Nodularia spumigena CCY 9414|Rep: Two-component
sensor histidine kinase - Nodularia spumigena CCY 9414
Length = 265
Score = 35.5 bits (78), Expect = 0.42
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 139 LYRIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNHPWHGSKIFKESKV 297
L RI+ S +WQ+QR +I++ + ++ QG G N +H S F +
Sbjct: 44 LARIDTSLEWQTQRFTLVISEQFSALLLGTQEQGEEGNNTGFHASLTFNSQAI 96
>UniRef50_UPI0000D9C65B Cluster: PREDICTED: similar to 60S ribosomal
protein L29 (Cell surface heparin-binding protein HIP);
n=1; Macaca mulatta|Rep: PREDICTED: similar to 60S
ribosomal protein L29 (Cell surface heparin-binding
protein HIP) - Macaca mulatta
Length = 237
Score = 34.7 bits (76), Expect = 0.73
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 159 IKMAKSKNHTNHNQNRKAHRNGIKKPRKTRH 251
++ S + T HNQ+RK +RNGIKK + +R+
Sbjct: 26 VQTCPSPHTTTHNQSRKWNRNGIKKSQSSRY 56
>UniRef50_A6SNG7 Cluster: Predicted protein; n=1; Botryotinia
fuckeliana B05.10|Rep: Predicted protein - Botryotinia
fuckeliana B05.10
Length = 329
Score = 34.3 bits (75), Expect = 0.96
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 132 YFPLQD*KLIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEPPLAWIQ 275
YFP+Q + A SK +++ ++NR I PRKT ++W Q
Sbjct: 3 YFPIQAQDVHFQASSKRNSDSSENRTCPVEDINDPRKTPSPSAISWFQ 50
>UniRef50_A7RTA1 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 94
Score = 32.7 bits (71), Expect = 2.9
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +2
Query: 263 GMDPKFLRNQRFCKKGNLK 319
G+DPKFLRN RF KK N K
Sbjct: 69 GVDPKFLRNLRFSKKHNKK 87
>UniRef50_UPI0000E46A11 Cluster: PREDICTED: similar to GA13983-PA;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to GA13983-PA - Strongylocentrotus purpuratus
Length = 336
Score = 31.9 bits (69), Expect = 5.1
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Frame = +3
Query: 174 SKNHTNHNQ-------NRKAHRNGIKKPRKTRHEPPLAWIQNF*GIKG----FARRVT*S 320
S +HTN N N H++ K PRK +H P ++ N+ G+ A+R T S
Sbjct: 209 SSHHTNSNNMHHHRPTNNVKHQSPRKSPRKRQHIPANEYVTNYLGLGAQDDPAAKRSTQS 268
Query: 321 QPSNSRGRLREKL 359
Q S+S E+L
Sbjct: 269 QSSSSTSEGPEEL 281
>UniRef50_Q7F1T9 Cluster: Putative uncharacterized protein
OJ1167_G06.119; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1167_G06.119 - Oryza sativa subsp. japonica (Rice)
Length = 270
Score = 31.5 bits (68), Expect = 6.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 189 NHNQNRKAHRNGIKKPRKTRHEPP 260
NH + R+ HR+ +++P RH PP
Sbjct: 42 NHGRRRRCHRHRLRRPPLRRHPPP 65
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 338,845,326
Number of Sequences: 1657284
Number of extensions: 5832907
Number of successful extensions: 17316
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 16582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17286
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18196175969
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -