Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30545.Seq
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical ...    31   1.1  
L26290-1|AAA27981.1|  441|Caenorhabditis elegans clathrin-associ...    28   8.1  
AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : short...    28   8.1  
AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : short...    28   8.1  

>AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical
           protein T07D3.9a protein.
          Length = 441

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
 Frame = +2

Query: 278 IDQSSSTKDLQTIFPQLINNIFSSSFSTGWD------LKSITCDVNRYEFEALISFLEPQ 439
           I + S T+ L+TIFP+   +I S  FST  D      + S  C V + + +   SF E +
Sbjct: 10  ISRFSQTRSLRTIFPKTTVSIASRPFSTDPDSLVDKMVSSTFCHVAKCQPD---SFSEEE 66

Query: 440 GPMFRLCYRLLSDTQLKYELPLN 508
               +L  R +S +  K+ +PL+
Sbjct: 67  KNSKKLEPRTISHSYRKFVIPLS 89


>L26290-1|AAA27981.1|  441|Caenorhabditis elegans
           clathrin-associated protein homologueprotein.
          Length = 441

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 392 VNRYEFEALISFLEPQGPMFRLCYRLLSDTQLKYE-LPL 505
           + ++E E  ISF+ P G    + YR   D QL +  +PL
Sbjct: 258 LTKFETEHAISFIPPDGEYELMRYRTTKDIQLPFRVIPL 296


>AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform b protein.
          Length = 435

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 392 VNRYEFEALISFLEPQGPMFRLCYRLLSDTQLKYE-LPL 505
           + ++E E  ISF+ P G    + YR   D QL +  +PL
Sbjct: 252 LTKFETEHAISFIPPDGEYELMRYRTTKDIQLPFRVIPL 290


>AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform a protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 392 VNRYEFEALISFLEPQGPMFRLCYRLLSDTQLKYE-LPL 505
           + ++E E  ISF+ P G    + YR   D QL +  +PL
Sbjct: 258 LTKFETEHAISFIPPDGEYELMRYRTTKDIQLPFRVIPL 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,628,826
Number of Sequences: 27780
Number of extensions: 320830
Number of successful extensions: 632
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)