Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30544.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   6.2  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   6.2  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   8.1  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -3

Query: 353 RNLAAAQKATDPIQQLFLDKIGEYKQKSAGGKVQMP 246
           ++L+  Q+  +  +   L   G  +Q    GKVQ+P
Sbjct: 17  KSLSIPQQILNEFKSTLLPLFGLKEQPKIEGKVQVP 52


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 390 NQF*YEHISNSYRS 431
           N++ Y H+SN Y S
Sbjct: 246 NEYFYSHLSNPYPS 259


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 497 FLFRCCCTLISL*KLNVL 444
           F F  CC  I+L  +N++
Sbjct: 76  FFFAICCDFIALIVVNIV 93


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,238
Number of Sequences: 336
Number of extensions: 2104
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)