Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30544.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18684| Best HMM Match : ATP-synt_F6 (HMM E-Value=1.5e-15)           42   4e-04
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_50226| Best HMM Match : LEA_4 (HMM E-Value=0.18)                    27   8.6  
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_18684| Best HMM Match : ATP-synt_F6 (HMM E-Value=1.5e-15)
          Length = 175

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
 Frame = -3

Query: 401 SKLVGLRAATTSMMVSRNL-------AAAQKATDPIQQLFLDKIGEYKQKSAGGKV 255
           S+L     +T S+++ RN+       A   K  DPIQ+LF++K+  YKQKS GGK+
Sbjct: 81  SRLAVASPSTCSIVLRRNIGTTYAAMAKMDKNADPIQRLFVEKLEAYKQKSKGGKL 136


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 367  EVVAALKPTSFDTSIFLIPIDQGISPRTFSFHSEINV 477
            ++     PT+     +LI +D  +S R F   SE+NV
Sbjct: 981  QIALVWSPTNKILQFYLIDVDGRVSSRNFPISSEVNV 1017


>SB_50226| Best HMM Match : LEA_4 (HMM E-Value=0.18)
          Length = 760

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -3

Query: 425 IGIRNMLVSKLVGLRAATTSMMVSRNLAAAQKATDPIQQLFLDKIGEYKQKSA 267
           +G++    SKLVG++   T+ +V     A  K     +Q     +G  +Q +A
Sbjct: 307 VGVKEQATSKLVGVKEQATAKLVGVKEQATSKLVGVKEQATSKLVGVKEQATA 359


>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 441 RNSLIDRN*KYARIKTGWFEGGDHFHDGQ*KFSGSSESYR 322
           RNSL+ RN   +  +  ++  GD F  G  K + SSE Y+
Sbjct: 326 RNSLLRRNQSLSAKQIMFYRNGDRFFSGL-KLAVSSERYK 364


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,451,892
Number of Sequences: 59808
Number of extensions: 282482
Number of successful extensions: 402
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)