Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30543.Seq
(698 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q15545 Cluster: Transcription initiation factor TFIID s... 43 0.006
UniRef50_Q176B1 Cluster: TFIID subunit TAFII55, putative; n=1; A... 42 0.011
UniRef50_Q7Q8X9 Cluster: ENSANGP00000020522; n=3; Endopterygota|... 42 0.015
UniRef50_UPI000155CD9C Cluster: PREDICTED: similar to TFIID subu... 39 0.14
UniRef50_Q9VHY5 Cluster: Transcription initiation factor TFIID s... 36 0.96
UniRef50_UPI000066038D Cluster: KIAA1598 (KIAA1598), mRNA; n=1; ... 35 1.7
UniRef50_Q23WN4 Cluster: Putative uncharacterized protein; n=1; ... 35 1.7
UniRef50_A0CBD1 Cluster: Chromosome undetermined scaffold_164, w... 34 3.9
UniRef50_UPI0000E48E62 Cluster: PREDICTED: similar to Eukaryotic... 33 6.7
UniRef50_Q4SDG1 Cluster: Chromosome undetermined SCAF14638, whol... 33 6.7
UniRef50_Q8F6Q6 Cluster: Probable transcription elongation; n=4;... 33 8.9
UniRef50_Q4V1P0 Cluster: Putative uncharacterized protein; n=1; ... 33 8.9
>UniRef50_Q15545 Cluster: Transcription initiation factor TFIID
subunit 7 (Transcription initiation factor TFIID 55 kDa
subunit) (TAF(II)55); n=30; Euteleostomi|Rep:
Transcription initiation factor TFIID subunit 7
(Transcription initiation factor TFIID 55 kDa subunit)
(TAF(II)55) - Homo sapiens (Human)
Length = 349
Score = 43.2 bits (97), Expect = 0.006
Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +2
Query: 515 KRELEYPAELESQFILKLPEHPAKILRELLKSGE-NLKNRLTIQ 643
K + + P ELESQFIL+LP A +R ++SG NLK+RLTI+
Sbjct: 3 KSKDDAPHELESQFILRLPPEYASTVRRAVQSGHVNLKDRLTIE 46
>UniRef50_Q176B1 Cluster: TFIID subunit TAFII55, putative; n=1;
Aedes aegypti|Rep: TFIID subunit TAFII55, putative -
Aedes aegypti (Yellowfever mosquito)
Length = 358
Score = 42.3 bits (95), Expect = 0.011
Identities = 19/36 (52%), Positives = 30/36 (83%), Gaps = 1/36 (2%)
Frame = +2
Query: 539 ELESQFILKLPEHPAKILRELLKSG-ENLKNRLTIQ 643
ELE+Q I+++P PA+ILRE +++G NLK+RL+I+
Sbjct: 18 ELETQIIMRMPVEPARILREAIQTGANNLKDRLSIR 53
>UniRef50_Q7Q8X9 Cluster: ENSANGP00000020522; n=3;
Endopterygota|Rep: ENSANGP00000020522 - Anopheles
gambiae str. PEST
Length = 286
Score = 41.9 bits (94), Expect = 0.015
Identities = 20/37 (54%), Positives = 29/37 (78%), Gaps = 1/37 (2%)
Frame = +2
Query: 536 AELESQFILKLPEHPAKILRELLKSG-ENLKNRLTIQ 643
AELE+Q I+++P+ PA LRE ++SG NLK+RL I+
Sbjct: 16 AELETQIIMRMPKEPAAALREAIQSGANNLKDRLFIR 52
>UniRef50_UPI000155CD9C Cluster: PREDICTED: similar to TFIID subunit
TAFII55; n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
similar to TFIID subunit TAFII55 - Ornithorhynchus
anatinus
Length = 405
Score = 38.7 bits (86), Expect = 0.14
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +2
Query: 512 DKRELEYPAELESQFILKLPEHPAKILRELLKSGE-NLKNRLTIQ 643
+KR+ + E+ESQFIL+LP A +R+++++G K RLTI+
Sbjct: 94 NKRKDDVSPEMESQFILRLPPEHAATVRQIIQAGNVGSKGRLTIE 138
>UniRef50_Q9VHY5 Cluster: Transcription initiation factor TFIID
subunit 7; n=4; Sophophora|Rep: Transcription initiation
factor TFIID subunit 7 - Drosophila melanogaster (Fruit
fly)
Length = 479
Score = 35.9 bits (79), Expect = 0.96
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +2
Query: 539 ELESQFILKLPEHPAKILRELLKSGENLKNRLTIQ 643
ELESQFI+++P+ A + E + +G +K+RLTIQ
Sbjct: 54 ELESQFIMRVPKELADTVHEAINAG-TIKDRLTIQ 87
>UniRef50_UPI000066038D Cluster: KIAA1598 (KIAA1598), mRNA; n=1;
Takifugu rubripes|Rep: KIAA1598 (KIAA1598), mRNA -
Takifugu rubripes
Length = 599
Score = 35.1 bits (77), Expect = 1.7
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = -3
Query: 219 TTDFITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQRSHSYNRKNFKRF 58
T + E+++F I +++++I+ L + L K QT+L ++Q + K KRF
Sbjct: 187 TVSTLLEEKKNFVCQIHEQQRQIEELTSQLQKHQTELKEIQETVDQQSKTIKRF 240
>UniRef50_Q23WN4 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 298
Score = 35.1 bits (77), Expect = 1.7
Identities = 14/44 (31%), Positives = 32/44 (72%)
Frame = -3
Query: 201 AEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQRSHSYNRKN 70
++Q+ K I+D+E+ ++ + LL+ QT+LSK+Q+ ++ N+++
Sbjct: 98 SQQKLVKKQIQDEEEELQKQKKQLLEKQTELSKVQKEYTINKRD 141
>UniRef50_A0CBD1 Cluster: Chromosome undetermined scaffold_164,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_164,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 443
Score = 33.9 bits (74), Expect = 3.9
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = -3
Query: 276 NIRTYFFRDFMTW*LRPLSTTDFITAEQRDFKLAIEDKEKRIKF-----LEAALLKTQTD 112
N + Y+ R + + + D I AE+ D+KLAI+D EK + + L K + +
Sbjct: 150 NAKAYYRRAKVLVFCKAQARLDDINAEESDYKLAIQDLEKALSIDDDEAIRKDLTKAKLE 209
Query: 111 LSKLQRS 91
L K+ RS
Sbjct: 210 LKKMMRS 216
>UniRef50_UPI0000E48E62 Cluster: PREDICTED: similar to Eukaryotic
translation initiation factor 3, subunit 10 (theta);
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to Eukaryotic translation initiation factor 3,
subunit 10 (theta) - Strongylocentrotus purpuratus
Length = 1284
Score = 33.1 bits (72), Expect = 6.7
Identities = 14/50 (28%), Positives = 30/50 (60%)
Frame = -3
Query: 207 ITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQRSHSYNRKNFKRF 58
+ AE+++ + ++ +EK+ + E A K Q D+ +++R H+ R N +F
Sbjct: 678 LEAEKKELQTKLKSQEKKREATERARRKQQEDMEEMKRKHAKERINAIKF 727
>UniRef50_Q4SDG1 Cluster: Chromosome undetermined SCAF14638, whole
genome shotgun sequence; n=2; Tetraodontidae|Rep:
Chromosome undetermined SCAF14638, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 1657
Score = 33.1 bits (72), Expect = 6.7
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = -1
Query: 122 LKLTFPSCRGRTATIEKISRDLNIEIHE 39
L LT PS G+TAT+ +SR+LNI I E
Sbjct: 44 LLLTGPSGCGKTATVRVLSRELNIRIQE 71
>UniRef50_Q8F6Q6 Cluster: Probable transcription elongation; n=4;
Leptospira|Rep: Probable transcription elongation -
Leptospira interrogans
Length = 212
Score = 32.7 bits (71), Expect = 8.9
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -3
Query: 222 STTDFITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQ 97
S + + AE KLA+E+KEK + L L KT +L+ L+
Sbjct: 33 SENETLRAENDQMKLAMEEKEKELSSLREQLQKTTNELNDLK 74
>UniRef50_Q4V1P0 Cluster: Putative uncharacterized protein; n=1;
Bacillus cereus E33L|Rep: Putative uncharacterized
protein - Bacillus cereus (strain ZK / E33L)
Length = 121
Score = 32.7 bits (71), Expect = 8.9
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = -3
Query: 189 DFKLAIEDKEKRIKF--LEAALLKTQTDLSKLQRSHSYNRKNFKRFKY 52
DFK+ E +E + F LE ++ D +K+Q + +YN ++F+RF Y
Sbjct: 69 DFKIRKEREEVKDYFTVLEDKIINEVDDETKIQLAENYNSEDFRRFIY 116
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 530,826,961
Number of Sequences: 1657284
Number of extensions: 8523018
Number of successful extensions: 26408
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 25337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26382
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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