Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30543.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    27   2.6  
SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|ch...    27   3.4  
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c...    26   6.0  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    25   7.9  

>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 575 HPAKILRELLKSGENLKNRLTIQ 643
           HPAK L ELL   ENL N  T++
Sbjct: 278 HPAKNLVELLTEKENLINESTLE 300


>SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 190

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 73  FSIVAVRPLQLGKVSLSFKKCCFQKLNTLFFVFYSQFKVPLL 198
           F    VR   L K+  SFK+       TLF   Y  +  PLL
Sbjct: 85  FVATTVRDYDLSKLLTSFKQMLVTIATTLFMHLYMGYAPPLL 126


>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 291

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 696 HPMIPSVXLPRRHIHYPICMVRRFF 622
           HP+   V +P   +H PIC+   FF
Sbjct: 176 HPVEERVPVPLSILHMPICVTFSFF 200


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/32 (31%), Positives = 23/32 (71%)
 Frame = +1

Query: 343 VIMYQSISVNNNMIYQVVVALNK*FFCIYLFT 438
           +I+Y S+S++NN +   +++L +  F +++FT
Sbjct: 8   LILYISLSIDNNYLVTTLISLKENVF-LHIFT 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,342
Number of Sequences: 5004
Number of extensions: 40530
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)