Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30543.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0229 - 6062825-6064899,6064943-6065432,6065479-6065956,606...    29   3.5  

>09_02_0229 - 6062825-6064899,6064943-6065432,6065479-6065956,
            6066333-6066382,6068917-6069172,6069358-6069503
          Length = 1164

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +1

Query: 88   VRPLQLGKVSLSFKKCCFQKLNTLFFVFYSQFKVPLLXXXXXXXXXXXXLPGHKIPKKIR 267
            +R L L      +KK  F+++NT+  +F   F  P L            LPG  I   + 
Sbjct: 844  LRHLILSCTMPQYKKLSFEEINTIEAIFEGLFPPPSLEKLQIINFCGQSLPGWLISSSLE 903

Query: 268  PNI 276
             N+
Sbjct: 904  TNL 906


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,332,432
Number of Sequences: 37544
Number of extensions: 207061
Number of successful extensions: 704
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)