Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30543.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)                   31   0.90 
SB_24121| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-08)                 28   8.4  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    28   8.4  

>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
          Length = 1088

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +2

Query: 173 IANLKSLCSAVMKSVVLKGLSYQVIKSLKKYVLIFININFTTLNVFYL*NEYDKL 337
           + NL +LC  + K+  +K  ++ ++      +L+ +++   TLN F+  +EYD L
Sbjct: 558 VLNLLALCVFLTKTFCIKKSNFLLLNLTVTDLLVGLSLGAKTLNEFFKPSEYDLL 612


>SB_24121| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-08)
          Length = 320

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 212 SVVLKGLSYQVIKSLKKYVLIFININFTTLNVFYL 316
           SVVL  L+  V+   ++Y+L+FI    T L + Y+
Sbjct: 162 SVVLSYLATFVMNKDQRYLLVFIQFGLTCLIIIYI 196


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = -3

Query: 174  IEDKEKRIKFLEAALLKTQTDLSKLQRSHSYNRKNFKRFK 55
            +EDKE RIK L+A+   T+  L  L++S   + ++++R +
Sbjct: 2247 LEDKEDRIKQLKASKEFTEGQLETLKQSLVLSTQDYERLQ 2286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,446,672
Number of Sequences: 59808
Number of extensions: 267165
Number of successful extensions: 753
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)