Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30543.Seq
(698 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X97999-1|CAA66636.1| 349|Homo sapiens transcription factor IID ... 43 0.001
U18062-1|AAB60347.1| 349|Homo sapiens TFIID subunit TAFII55 pro... 43 0.001
BC032737-1|AAH32737.1| 349|Homo sapiens TAF7 RNA polymerase II,... 43 0.001
AF349038-1|AAK30585.1| 349|Homo sapiens TFIID subunit TAFII55 p... 43 0.001
Z68331-4|CAI42017.1| 462|Homo sapiens TAF7-like RNA polymerase ... 31 4.0
Z68331-2|CAI42014.1| 302|Homo sapiens TAF7-like RNA polymerase ... 31 4.0
Z68331-1|CAI42015.1| 376|Homo sapiens TAF7-like RNA polymerase ... 31 4.0
BC043391-1|AAH43391.1| 462|Homo sapiens TAF7-like RNA polymeras... 31 4.0
AL109801-3|CAI43036.1| 462|Homo sapiens TAF7-like RNA polymeras... 31 4.0
AL109801-2|CAI43034.1| 302|Homo sapiens TAF7-like RNA polymeras... 31 4.0
AL109801-1|CAI43035.1| 376|Homo sapiens TAF7-like RNA polymeras... 31 4.0
AK026810-1|BAB15560.1| 302|Homo sapiens protein ( Homo sapiens ... 31 4.0
AF285595-1|AAK31974.1| 374|Homo sapiens TBP-associated factor I... 31 4.0
>X97999-1|CAA66636.1| 349|Homo sapiens transcription factor IID
protein.
Length = 349
Score = 43.2 bits (97), Expect = 0.001
Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +2
Query: 515 KRELEYPAELESQFILKLPEHPAKILRELLKSGE-NLKNRLTIQ 643
K + + P ELESQFIL+LP A +R ++SG NLK+RLTI+
Sbjct: 3 KSKDDAPHELESQFILRLPPEYASTVRRAVQSGHVNLKDRLTIE 46
>U18062-1|AAB60347.1| 349|Homo sapiens TFIID subunit TAFII55
protein.
Length = 349
Score = 43.2 bits (97), Expect = 0.001
Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +2
Query: 515 KRELEYPAELESQFILKLPEHPAKILRELLKSGE-NLKNRLTIQ 643
K + + P ELESQFIL+LP A +R ++SG NLK+RLTI+
Sbjct: 3 KSKDDAPHELESQFILRLPPEYASTVRRAVQSGHVNLKDRLTIE 46
>BC032737-1|AAH32737.1| 349|Homo sapiens TAF7 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 55kDa
protein.
Length = 349
Score = 43.2 bits (97), Expect = 0.001
Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +2
Query: 515 KRELEYPAELESQFILKLPEHPAKILRELLKSGE-NLKNRLTIQ 643
K + + P ELESQFIL+LP A +R ++SG NLK+RLTI+
Sbjct: 3 KSKDDAPHELESQFILRLPPEYASTVRRAVQSGHVNLKDRLTIE 46
>AF349038-1|AAK30585.1| 349|Homo sapiens TFIID subunit TAFII55
protein.
Length = 349
Score = 43.2 bits (97), Expect = 0.001
Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +2
Query: 515 KRELEYPAELESQFILKLPEHPAKILRELLKSGE-NLKNRLTIQ 643
K + + P ELESQFIL+LP A +R ++SG NLK+RLTI+
Sbjct: 3 KSKDDAPHELESQFILRLPPEYASTVRRAVQSGHVNLKDRLTIE 46
>Z68331-4|CAI42017.1| 462|Homo sapiens TAF7-like RNA polymerase II,
TATA box binding protein (TBP)-associated factor,
protein.
Length = 462
Score = 31.1 bits (67), Expect = 4.0
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 527 EYPAELESQFILKLPEHPAKILRELLKS-GENLKNRLTI 640
E P E+E+QFIL+LP A +R L +S +K++L I
Sbjct: 93 EVPDEVENQFILRLPLEHACTVRNLARSQSVKMKDKLKI 131
>Z68331-2|CAI42014.1| 302|Homo sapiens TAF7-like RNA polymerase II,
TATA box binding protein (TBP)-associated factor,
protein.
Length = 302
Score = 31.1 bits (67), Expect = 4.0
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 527 EYPAELESQFILKLPEHPAKILRELLKS-GENLKNRLTI 640
E P E+E+QFIL+LP A +R L +S +K++L I
Sbjct: 7 EVPDEVENQFILRLPLEHACTVRNLARSQSVKMKDKLKI 45
>Z68331-1|CAI42015.1| 376|Homo sapiens TAF7-like RNA polymerase II,
TATA box binding protein (TBP)-associated factor,
protein.
Length = 376
Score = 31.1 bits (67), Expect = 4.0
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 527 EYPAELESQFILKLPEHPAKILRELLKS-GENLKNRLTI 640
E P E+E+QFIL+LP A +R L +S +K++L I
Sbjct: 7 EVPDEVENQFILRLPLEHACTVRNLARSQSVKMKDKLKI 45
>BC043391-1|AAH43391.1| 462|Homo sapiens TAF7-like RNA polymerase
II, TATA box binding protein (TBP)-associated factor,
protein.
Length = 462
Score = 31.1 bits (67), Expect = 4.0
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 527 EYPAELESQFILKLPEHPAKILRELLKS-GENLKNRLTI 640
E P E+E+QFIL+LP A +R L +S +K++L I
Sbjct: 93 EVPDEVENQFILRLPLEHACTVRNLARSQSVKMKDKLKI 131
>AL109801-3|CAI43036.1| 462|Homo sapiens TAF7-like RNA polymerase
II, TATA box binding protein (TBP)-associated factor,
protein.
Length = 462
Score = 31.1 bits (67), Expect = 4.0
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 527 EYPAELESQFILKLPEHPAKILRELLKS-GENLKNRLTI 640
E P E+E+QFIL+LP A +R L +S +K++L I
Sbjct: 93 EVPDEVENQFILRLPLEHACTVRNLARSQSVKMKDKLKI 131
>AL109801-2|CAI43034.1| 302|Homo sapiens TAF7-like RNA polymerase
II, TATA box binding protein (TBP)-associated factor,
protein.
Length = 302
Score = 31.1 bits (67), Expect = 4.0
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 527 EYPAELESQFILKLPEHPAKILRELLKS-GENLKNRLTI 640
E P E+E+QFIL+LP A +R L +S +K++L I
Sbjct: 7 EVPDEVENQFILRLPLEHACTVRNLARSQSVKMKDKLKI 45
>AL109801-1|CAI43035.1| 376|Homo sapiens TAF7-like RNA polymerase
II, TATA box binding protein (TBP)-associated factor,
protein.
Length = 376
Score = 31.1 bits (67), Expect = 4.0
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 527 EYPAELESQFILKLPEHPAKILRELLKS-GENLKNRLTI 640
E P E+E+QFIL+LP A +R L +S +K++L I
Sbjct: 7 EVPDEVENQFILRLPLEHACTVRNLARSQSVKMKDKLKI 45
>AK026810-1|BAB15560.1| 302|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23157 fis, clone LNG09620. ).
Length = 302
Score = 31.1 bits (67), Expect = 4.0
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 527 EYPAELESQFILKLPEHPAKILRELLKS-GENLKNRLTI 640
E P E+E+QFIL+LP A +R L +S +K++L I
Sbjct: 7 EVPDEVENQFILRLPLEHACTVRNLARSQSVKMKDKLKI 45
>AF285595-1|AAK31974.1| 374|Homo sapiens TBP-associated factor II Q
protein.
Length = 374
Score = 31.1 bits (67), Expect = 4.0
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 527 EYPAELESQFILKLPEHPAKILRELLKS-GENLKNRLTI 640
E P E+E+QFIL+LP A +R L +S +K++L I
Sbjct: 7 EVPDEVENQFILRLPLEHACTVRNLARSQSVKMKDKLKI 45
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,118,309
Number of Sequences: 237096
Number of extensions: 1170657
Number of successful extensions: 3063
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3058
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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