Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30543.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine re...    28   5.6  
AF043704-3|AAK21473.2|  823|Caenorhabditis elegans Sulfate perme...    28   5.6  
AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine r...    28   5.6  
Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 61 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +2

Query: 167 SSIANLKSLCSAVMKSVVLKGLSYQVIKSLKKYVLIFI 280
           SSI+   S  + VM  +++KGL+ QV+  L  YV I I
Sbjct: 218 SSISTASSKSTRVMSELLVKGLNLQVLLPLICYVPISI 255


>AF043704-3|AAK21473.2|  823|Caenorhabditis elegans Sulfate permease
           family protein 6 protein.
          Length = 823

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 506 EKDKRELEYPAELESQFILKLPEHPAKILRE 598
           EK++ + E P E E +  L++  H AK+L E
Sbjct: 610 EKEEEDAEIPKETEKETKLEVTTHQAKVLDE 640


>AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 75 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +2

Query: 167 SSIANLKSLCSAVMKSVVLKGLSYQVIKSLKKYVLIFI 280
           SSI+   S  + VM  +++KGL+ QV+  L  YV I I
Sbjct: 218 SSISTASSKSTRVMSELLVKGLNLQVLLPLICYVPISI 255


>Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical
           protein R07E5.1 protein.
          Length = 812

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 494 GSDNEKDKRELEYPAELESQFILKLPEHPAKILRELLKSGENLKNRLTIQ 643
           G+D+++   E E   E E Q ILK  E   K  RE+++  E  +NR  ++
Sbjct: 654 GADSDESNSEDEEAEEKERQEILKKREEDLKRRREIVEKKEE-ENRKRVE 702


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,709,524
Number of Sequences: 27780
Number of extensions: 218003
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)