Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30543.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   4.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   4.9  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   4.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   4.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.5  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 195 QRDFKLAIE-DKEKRIKFLEAALLKTQTDLSKLQRSHSYNRKNFKR 61
           +R+++   E  KE+     E    K    +S L  +++YN  N+K+
Sbjct: 53  EREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKK 98


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 195 QRDFKLAIE-DKEKRIKFLEAALLKTQTDLSKLQRSHSYNRKNFKR 61
           +R+++   E  KE+     E    K    +S L  +++YN  N+K+
Sbjct: 53  EREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKK 98


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 195 QRDFKLAIE-DKEKRIKFLEAALLKTQTDLSKLQRSHSYNRKNFKR 61
           +R+++   E  KE+     E    K    +S L  +++YN  N+K+
Sbjct: 53  EREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKK 98


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 165 KEKRIKFLEAALLKTQTDLSKLQRSHSYNRKNFKRFKY*N 46
           KE+     E    K +  +S L  +++YN  N+K + Y N
Sbjct: 297 KERSRDRTERERSKERKIISSLSNNYNYNNNNYK-YNYNN 335


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 80  IEKISRDLNIEIHEIPES 27
           I+K ++D+N+EI   P+S
Sbjct: 461 IDKETKDMNLEISTRPKS 478


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,186
Number of Sequences: 438
Number of extensions: 2797
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)