Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30543.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08680.2 68416.m01009 leucine-rich repeat transmembrane prote...    31   0.73 
At3g08680.1 68416.m01008 leucine-rich repeat transmembrane prote...    31   0.73 
At5g66480.1 68418.m08383 expressed protein similar to unknown pr...    29   3.0  
At1g59453.1 68414.m06679 transcription factor-related weak simil...    29   3.9  
At3g15600.1 68416.m01976 hypothetical protein low similarity to ...    28   5.2  
At3g44740.1 68416.m04816 tRNA synthetase class II (G, H, P and S...    27   9.0  
At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA ...    27   9.0  

>At3g08680.2 68416.m01009 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069
           Eukaryotic protein kinase domain, PF00560 leucine Rich
           Repeat (5 copies)
          Length = 640

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 458 FLYITLFLSRCIGSDNEKDKREL 526
           FL +T F+SRC+ +D E DK+ L
Sbjct: 10  FLLVTTFVSRCLSADIESDKQAL 32


>At3g08680.1 68416.m01008 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069
           Eukaryotic protein kinase domain, PF00560 leucine Rich
           Repeat (5 copies)
          Length = 640

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 458 FLYITLFLSRCIGSDNEKDKREL 526
           FL +T F+SRC+ +D E DK+ L
Sbjct: 10  FLLVTTFVSRCLSADIESDKQAL 32


>At5g66480.1 68418.m08383 expressed protein similar to unknown
           protein (pir||T08412)
          Length = 444

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 461 LYITLFLSRCIGSDNEKDKRELEYPAELESQ 553
           L +T F+S  +GSD  K + E+E  AELE++
Sbjct: 329 LEVTRFVSDTLGSDLAKTEVEMEMEAELEAK 359


>At1g59453.1 68414.m06679 transcription factor-related weak similarity
            to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
          Length = 1729

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -3

Query: 234  LRPLSTTDFITAEQRDFKLAIEDKEKRIKFLEAALLKTQTDLSKLQRSHSYNRKNFKRFK 55
            +R  ++   +TAEQR   L   D++ ++ F E        +L+  Q  H Y+ K+ +R K
Sbjct: 848  VRSWASDHVMTAEQRAKLLQCIDEKAKLSFKECEKFAKDLNLTIEQVMHVYHAKHGRRVK 907


>At3g15600.1 68416.m01976 hypothetical protein low similarity to KED
           [Nicotiana tabacum] GI:8096269; contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 591

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 192 RDFKLAIEDKEKRIKFLEAALLKTQTDL 109
           +DF    E+++KR+K LEAA+   Q+ +
Sbjct: 356 KDFSKKYEEQDKRLKLLEAAIKSIQSGI 383


>At3g44740.1 68416.m04816 tRNA synthetase class II (G, H, P and S)
           family protein similar to SP|O23627 Glycyl-tRNA
           synthetase (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS)
           {Arabidopsis thaliana}; contains Pfam profile PF00587:
           tRNA synthetase class II core domain (G, H, P, S and T)
          Length = 276

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 164 KKSVLSFWKQHFL 126
           K +VLSFW+QHF+
Sbjct: 33  KSNVLSFWRQHFI 45


>At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA
           ligase identical to SP|O23627 Glycyl-tRNA synthetase (EC
           6.1.1.14) (Glycine--tRNA ligase) (GlyRS) {Arabidopsis
           thaliana}
          Length = 729

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 164 KKSVLSFWKQHFL 126
           K +VLSFW+QHF+
Sbjct: 154 KSNVLSFWRQHFI 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,578,043
Number of Sequences: 28952
Number of extensions: 191053
Number of successful extensions: 601
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)