Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30540.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)                       31   0.90 

>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
          Length = 323

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
 Frame = +3

Query: 207 TCSHCLTIQCRHSTK-----RTRERCDFSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLF 371
           TC HC  I  R+ST       T      +AAA+S +SS+       +H   L    ++L+
Sbjct: 165 TCQHCWRILARNSTVIIIIIITSSSSSSAAAASSSSSSSSSSSHHHYHRHHLHHHHKALY 224

Query: 372 ILFTHFHERRAQ--FVNIGANLXICA 443
            L  H     AQ  + N G+ L  CA
Sbjct: 225 KLRQHTPTLLAQQCWRNTGSELGRCA 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,547,637
Number of Sequences: 59808
Number of extensions: 422514
Number of successful extensions: 1160
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)