Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30540.Seq
(698 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457260-1|CAG33541.1| 247|Homo sapiens FLJ10525 protein. 95 3e-19
BC000948-1|AAH00948.2| 247|Homo sapiens transmembrane protein 3... 95 3e-19
AY659966-1|AAV70491.1| 247|Homo sapiens SHINC3 protein. 95 3e-19
AK023062-1|BAB14384.1| 247|Homo sapiens protein ( Homo sapiens ... 95 3e-19
AK001387-1|BAA91665.1| 247|Homo sapiens protein ( Homo sapiens ... 95 3e-19
BC075825-1|AAH75825.1| 661|Homo sapiens ALS2CL protein protein. 34 0.42
BC061883-1|AAH61883.1| 661|Homo sapiens ALS2CL protein protein. 34 0.42
BC042906-1|AAH42906.1| 661|Homo sapiens ALS2CL protein protein. 34 0.42
AK131273-1|BAD18450.1| 705|Homo sapiens protein ( Homo sapiens ... 34 0.42
AK131270-1|BAD18448.1| 953|Homo sapiens protein ( Homo sapiens ... 34 0.42
AK093844-1|BAC04237.1| 468|Homo sapiens protein ( Homo sapiens ... 34 0.42
AK092455-1|BAC03895.1| 300|Homo sapiens protein ( Homo sapiens ... 34 0.42
AB107015-1|BAD51817.1| 953|Homo sapiens ALS2 C-terminal like pr... 34 0.42
BC109233-1|AAI09234.1| 190|Homo sapiens ALS2CL protein protein. 31 5.2
AK126505-1|BAC86572.1| 205|Homo sapiens protein ( Homo sapiens ... 31 5.2
L29220-1|AAA61483.1| 152|Homo sapiens clk3 protein. 30 9.1
>CR457260-1|CAG33541.1| 247|Homo sapiens FLJ10525 protein.
Length = 247
Score = 94.7 bits (225), Expect = 3e-19
Identities = 48/104 (46%), Positives = 64/104 (61%)
Frame = +1
Query: 247 QSVLANAATSALRLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLLILVP 426
+++LANA TSALRLHQR+P LSR F+A+ LEDS HYL YSLIF+N P + + P
Sbjct: 57 RALLANALTSALRLHQRLP--HFQLSRAFLAQALLEDSCHYLLYSLIFVNSYPVTMSIFP 114
Query: 427 IFXFALLHAASYSLTILDTLGQNXXXXXXXXXXXXEFQSRNILR 558
+ F+LLHAA+Y+ +LD G N +NIL+
Sbjct: 115 VLLFSLLHAATYTKKVLDARGSNSLPLLRSVLDKLSANQQNILK 158
Score = 37.1 bits (82), Expect = 0.060
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Frame = +2
Query: 95 DTGP--PKGIPALKAHIIANKIDVALWGVRVITVLCTIGYVFPLFN-NPVSAFYK 250
DT P P+G A++ ++ NK+D A+W R+ TV C+ +V PL + ++FY+
Sbjct: 3 DTTPNGPQGAGAVQ-FMMTNKLDTAMWLSRLFTVYCSALFVLPLLGLHEAASFYQ 56
>BC000948-1|AAH00948.2| 247|Homo sapiens transmembrane protein 33
protein.
Length = 247
Score = 94.7 bits (225), Expect = 3e-19
Identities = 48/104 (46%), Positives = 64/104 (61%)
Frame = +1
Query: 247 QSVLANAATSALRLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLLILVP 426
+++LANA TSALRLHQR+P LSR F+A+ LEDS HYL YSLIF+N P + + P
Sbjct: 57 RALLANALTSALRLHQRLP--HFQLSRAFLAQALLEDSCHYLLYSLIFVNSYPVTMSIFP 114
Query: 427 IFXFALLHAASYSLTILDTLGQNXXXXXXXXXXXXEFQSRNILR 558
+ F+LLHAA+Y+ +LD G N +NIL+
Sbjct: 115 VLLFSLLHAATYTKKVLDARGSNSLPLLRSVLDKLSANQQNILK 158
Score = 37.1 bits (82), Expect = 0.060
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Frame = +2
Query: 95 DTGP--PKGIPALKAHIIANKIDVALWGVRVITVLCTIGYVFPLFN-NPVSAFYK 250
DT P P+G A++ ++ NK+D A+W R+ TV C+ +V PL + ++FY+
Sbjct: 3 DTTPNGPQGAGAVQ-FMMTNKLDTAMWLSRLFTVYCSALFVLPLLGLHEAASFYQ 56
>AY659966-1|AAV70491.1| 247|Homo sapiens SHINC3 protein.
Length = 247
Score = 94.7 bits (225), Expect = 3e-19
Identities = 48/104 (46%), Positives = 64/104 (61%)
Frame = +1
Query: 247 QSVLANAATSALRLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLLILVP 426
+++LANA TSALRLHQR+P LSR F+A+ LEDS HYL YSLIF+N P + + P
Sbjct: 57 RALLANALTSALRLHQRLP--HFQLSRAFLAQALLEDSCHYLLYSLIFVNSYPVTMSIFP 114
Query: 427 IFXFALLHAASYSLTILDTLGQNXXXXXXXXXXXXEFQSRNILR 558
+ F+LLHAA+Y+ +LD G N +NIL+
Sbjct: 115 VLLFSLLHAATYTKKVLDARGSNSLPLLRSVLDKLSANQQNILK 158
Score = 37.1 bits (82), Expect = 0.060
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Frame = +2
Query: 95 DTGP--PKGIPALKAHIIANKIDVALWGVRVITVLCTIGYVFPLFN-NPVSAFYK 250
DT P P+G A++ ++ NK+D A+W R+ TV C+ +V PL + ++FY+
Sbjct: 3 DTTPSGPQGAGAVQ-FMMTNKLDTAMWLSRLFTVYCSALFVLPLLGLHEAASFYQ 56
>AK023062-1|BAB14384.1| 247|Homo sapiens protein ( Homo sapiens
cDNA FLJ13000 fis, clone NT2RP3000333, highly similar to
Rattus norvegicus db83 mRNA. ).
Length = 247
Score = 94.7 bits (225), Expect = 3e-19
Identities = 48/104 (46%), Positives = 64/104 (61%)
Frame = +1
Query: 247 QSVLANAATSALRLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLLILVP 426
+++LANA TSALRLHQR+P LSR F+A+ LEDS HYL YSLIF+N P + + P
Sbjct: 57 RALLANALTSALRLHQRLP--HFQLSRAFLAQALLEDSCHYLLYSLIFVNSYPVTMSIFP 114
Query: 427 IFXFALLHAASYSLTILDTLGQNXXXXXXXXXXXXEFQSRNILR 558
+ F+LLHAA+Y+ +LD G N +NIL+
Sbjct: 115 VLLFSLLHAATYTKKVLDARGSNSLPLLRSVLDKLSANQQNILK 158
Score = 37.1 bits (82), Expect = 0.060
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Frame = +2
Query: 95 DTGP--PKGIPALKAHIIANKIDVALWGVRVITVLCTIGYVFPLFN-NPVSAFYK 250
DT P P+G A++ ++ NK+D A+W R+ TV C+ +V PL + ++FY+
Sbjct: 3 DTTPNGPQGAGAVQ-FMMTNKLDTAMWLSRLFTVYCSALFVLPLLGLHEAASFYQ 56
>AK001387-1|BAA91665.1| 247|Homo sapiens protein ( Homo sapiens
cDNA FLJ10525 fis, clone NT2RP2000892. ).
Length = 247
Score = 94.7 bits (225), Expect = 3e-19
Identities = 48/104 (46%), Positives = 64/104 (61%)
Frame = +1
Query: 247 QSVLANAATSALRLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLLILVP 426
+++LANA TSALRLHQR+P LSR F+A+ LEDS HYL YSLIF+N P + + P
Sbjct: 57 RALLANALTSALRLHQRLP--HFQLSRAFLAQALLEDSCHYLLYSLIFVNSYPVTMSIFP 114
Query: 427 IFXFALLHAASYSLTILDTLGQNXXXXXXXXXXXXEFQSRNILR 558
+ F+LLHAA+Y+ +LD G N +NIL+
Sbjct: 115 VLLFSLLHAATYTKKVLDARGSNSLPLLRSVLDKLSANQQNILK 158
Score = 37.1 bits (82), Expect = 0.060
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Frame = +2
Query: 95 DTGP--PKGIPALKAHIIANKIDVALWGVRVITVLCTIGYVFPLFN-NPVSAFYK 250
DT P P+G A++ ++ NK+D A+W R+ TV C+ +V PL + ++FY+
Sbjct: 3 DTTPSGPQGAGAVQ-FMMTNKLDTAMWLSRLFTVYCSALFVLPLLGLHEAASFYQ 56
>BC075825-1|AAH75825.1| 661|Homo sapiens ALS2CL protein protein.
Length = 661
Score = 34.3 bits (75), Expect = 0.42
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 279 AAATSKNSSTRDLPLAGFHGEV-LPGGQRSLFILFTHFHERRAQFVNIG-ANLXICAATR 452
A +++ TRDL + G + LP LF L+ HER F + G ANL + T+
Sbjct: 450 ALEEDEDTETRDLQVHGLVLPLMLPSFYSELFTLYLLLHEREDSFYSQGIANLSLFPDTQ 509
Query: 453 RFVFLDYP*YSW 488
FLD + W
Sbjct: 510 LLEFLDVQKHLW 521
>BC061883-1|AAH61883.1| 661|Homo sapiens ALS2CL protein protein.
Length = 661
Score = 34.3 bits (75), Expect = 0.42
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 279 AAATSKNSSTRDLPLAGFHGEV-LPGGQRSLFILFTHFHERRAQFVNIG-ANLXICAATR 452
A +++ TRDL + G + LP LF L+ HER F + G ANL + T+
Sbjct: 450 ALEEDEDTETRDLQVHGLVLPLMLPSFYSELFTLYLLLHEREDSFYSQGIANLSLFPDTQ 509
Query: 453 RFVFLDYP*YSW 488
FLD + W
Sbjct: 510 LLEFLDVQKHLW 521
>BC042906-1|AAH42906.1| 661|Homo sapiens ALS2CL protein protein.
Length = 661
Score = 34.3 bits (75), Expect = 0.42
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 279 AAATSKNSSTRDLPLAGFHGEV-LPGGQRSLFILFTHFHERRAQFVNIG-ANLXICAATR 452
A +++ TRDL + G + LP LF L+ HER F + G ANL + T+
Sbjct: 450 ALEEDEDTETRDLQVHGLVLPLMLPSFYSELFTLYLLLHEREDSFYSQGIANLSLFPDTQ 509
Query: 453 RFVFLDYP*YSW 488
FLD + W
Sbjct: 510 LLEFLDVQKHLW 521
>AK131273-1|BAD18450.1| 705|Homo sapiens protein ( Homo sapiens
cDNA FLJ16212 fis, clone CTONG2024031. ).
Length = 705
Score = 34.3 bits (75), Expect = 0.42
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 279 AAATSKNSSTRDLPLAGFHGEV-LPGGQRSLFILFTHFHERRAQFVNIG-ANLXICAATR 452
A +++ TRDL + G + LP LF L+ HER F + G ANL + T+
Sbjct: 543 ALEEDEDTETRDLQVHGLVLPLMLPSFYSELFTLYLLLHEREDSFYSQGIANLSLFPDTQ 602
Query: 453 RFVFLDYP*YSW 488
FLD + W
Sbjct: 603 LLEFLDVQKHLW 614
>AK131270-1|BAD18448.1| 953|Homo sapiens protein ( Homo sapiens
cDNA FLJ16208 fis, clone CTONG2020374. ).
Length = 953
Score = 34.3 bits (75), Expect = 0.42
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 279 AAATSKNSSTRDLPLAGFHGEV-LPGGQRSLFILFTHFHERRAQFVNIG-ANLXICAATR 452
A +++ TRDL + G + LP LF L+ HER F + G ANL + T+
Sbjct: 742 ALEEDEDTETRDLQVHGLVLPLMLPSFYSELFTLYLLLHEREDSFYSQGIANLSLFPDTQ 801
Query: 453 RFVFLDYP*YSW 488
FLD + W
Sbjct: 802 LLEFLDVQKHLW 813
>AK093844-1|BAC04237.1| 468|Homo sapiens protein ( Homo sapiens
cDNA FLJ36525 fis, clone TRACH2002988. ).
Length = 468
Score = 34.3 bits (75), Expect = 0.42
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 279 AAATSKNSSTRDLPLAGFHGEV-LPGGQRSLFILFTHFHERRAQFVNIG-ANLXICAATR 452
A +++ TRDL + G + LP LF L+ HER F + G ANL + T+
Sbjct: 257 ALEEDEDTETRDLQVHGLVLPLMLPSFYSELFTLYLLLHEREDSFYSQGIANLSLFPDTQ 316
Query: 453 RFVFLDYP*YSW 488
FLD + W
Sbjct: 317 LLEFLDVQKHLW 328
>AK092455-1|BAC03895.1| 300|Homo sapiens protein ( Homo sapiens
cDNA FLJ35136 fis, clone PLACE6009338. ).
Length = 300
Score = 34.3 bits (75), Expect = 0.42
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 279 AAATSKNSSTRDLPLAGFHGEV-LPGGQRSLFILFTHFHERRAQFVNIG-ANLXICAATR 452
A +++ TRDL + G + LP LF L+ HER F + G ANL + T+
Sbjct: 89 ALEEDEDTETRDLQVHGLVLPLMLPSFYSELFTLYLLLHEREDSFYSQGIANLSLFPDTQ 148
Query: 453 RFVFLDYP*YSW 488
FLD + W
Sbjct: 149 LLEFLDVQKHLW 160
>AB107015-1|BAD51817.1| 953|Homo sapiens ALS2 C-terminal like
protein.
Length = 953
Score = 34.3 bits (75), Expect = 0.42
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 279 AAATSKNSSTRDLPLAGFHGEV-LPGGQRSLFILFTHFHERRAQFVNIG-ANLXICAATR 452
A +++ TRDL + G + LP LF L+ HER F + G ANL + T+
Sbjct: 742 ALEEDEDTETRDLQVHGLVLPLMLPSFYSELFTLYLLLHEREDSFYSQGIANLSLFPDTQ 801
Query: 453 RFVFLDYP*YSW 488
FLD + W
Sbjct: 802 LLEFLDVQKHLW 813
>BC109233-1|AAI09234.1| 190|Homo sapiens ALS2CL protein protein.
Length = 190
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 342 VLPGGQRSLFILFTHFHERRAQFVNIG-ANLXICAATRRFVFLDYP*YSW 488
+LP LF L+ HER F + G ANL + T+ FLD + W
Sbjct: 1 MLPSFYSELFTLYLLLHEREDSFYSQGIANLSLFPDTQLLEFLDVQKHLW 50
>AK126505-1|BAC86572.1| 205|Homo sapiens protein ( Homo sapiens
cDNA FLJ44541 fis, clone UTERU3005460. ).
Length = 205
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 342 VLPGGQRSLFILFTHFHERRAQFVNIG-ANLXICAATRRFVFLDYP*YSW 488
+LP LF L+ HER F + G ANL + T+ FLD + W
Sbjct: 1 MLPSFYSELFTLYLLLHEREDSFYSQGIANLSLFPDTQLLEFLDVQKHLW 50
>L29220-1|AAA61483.1| 152|Homo sapiens clk3 protein.
Length = 152
Score = 29.9 bits (64), Expect = 9.1
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 67 YGRSKSASRRHWSTKRHP--SLESSHHCQ*NRRSSLGGPRNHRAVYHWIRVPI 219
YG S+S RR S +R P + + +HHC R S + R W++ P+
Sbjct: 84 YGPSRSRHRRR-SRERGPYRTRKHAHHCHKRRTRSCSSASSMRLWGTWVKAPL 135
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,348,497
Number of Sequences: 237096
Number of extensions: 1983723
Number of successful extensions: 5493
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5488
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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