Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30540.Seq
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032626-27|CAA21541.1| 271|Caenorhabditis elegans Hypothetical... 65 4e-11
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 32 0.34
Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical pr... 31 0.60
Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical p... 31 0.60
AF100673-3|ABA00151.1| 950|Caenorhabditis elegans Hypothetical ... 30 1.8
AF100673-2|AAU05553.1| 899|Caenorhabditis elegans Hypothetical ... 30 1.8
AF100673-1|AAP13733.1| 897|Caenorhabditis elegans Hypothetical ... 30 1.8
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 29 4.2
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 29 4.2
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 29 4.2
AL023837-3|CAB63348.2| 283|Caenorhabditis elegans Hypothetical ... 28 7.4
AL021503-2|CAA16421.1| 320|Caenorhabditis elegans Hypothetical ... 28 7.4
Z77656-3|CAB01140.1| 424|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z74042-14|CAE11313.1| 311|Caenorhabditis elegans Hypothetical p... 27 9.8
AF326788-1|AAK38269.1| 424|Caenorhabditis elegans CLN-3.1 protein. 27 9.8
>AL032626-27|CAA21541.1| 271|Caenorhabditis elegans Hypothetical
protein Y37D8A.17 protein.
Length = 271
Score = 65.3 bits (152), Expect = 4e-11
Identities = 32/77 (41%), Positives = 47/77 (61%)
Frame = +1
Query: 259 ANAATSALRLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLLILVPIFXF 438
A+AAT ALRLH RI + +L+ F+ R +EDS HYL YS++F+ P + +P+ +
Sbjct: 85 ASAATFALRLHTRIQG-QFALNAQFIQRLIIEDSFHYLVYSVVFLMAAPVSMAALPVTIY 143
Query: 439 ALLHAASYSLTILDTLG 489
A LHA ++ IL G
Sbjct: 144 AALHACTFMTKILRETG 160
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 198 PLDTCSHCLTIQCRHST-KRTRERCDFSAAATSKNSSTR 311
PL TC HC C S KR R C +A+++S ++++R
Sbjct: 724 PLFTCEHCARQLCSMSNLKRHRATCKVAASSSSNSAASR 762
>Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical
protein T08A11.2 protein.
Length = 1322
Score = 31.5 bits (68), Expect = 0.60
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Frame = -2
Query: 685 RPDAYVHVTKQXSTXGLIKPAVTEQXHXEYXREQHDLCERRGPGGCSATG---TRPGTMS 515
R DA+V T G + + H E R + +L +R G TG + G
Sbjct: 137 RADAFVDQTPDNRNRGYAEVMRDQMYHEEKGRVERELADRAKAGELHVTGQPEKKKGRWD 196
Query: 514 RRPPTTNFXQEYQG*SRNTKRRVAAQXKRL 425
P+T+ + G + T + +A KRL
Sbjct: 197 AEAPSTDASSDNLGAASATPSQGSAPRKRL 226
>Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical
protein T08A11.2 protein.
Length = 1322
Score = 31.5 bits (68), Expect = 0.60
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Frame = -2
Query: 685 RPDAYVHVTKQXSTXGLIKPAVTEQXHXEYXREQHDLCERRGPGGCSATG---TRPGTMS 515
R DA+V T G + + H E R + +L +R G TG + G
Sbjct: 137 RADAFVDQTPDNRNRGYAEVMRDQMYHEEKGRVERELADRAKAGELHVTGQPEKKKGRWD 196
Query: 514 RRPPTTNFXQEYQG*SRNTKRRVAAQXKRL 425
P+T+ + G + T + +A KRL
Sbjct: 197 AEAPSTDASSDNLGAASATPSQGSAPRKRL 226
>AF100673-3|ABA00151.1| 950|Caenorhabditis elegans Hypothetical
protein Y66H1B.2c protein.
Length = 950
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 273 FSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLFILFTH 386
F R L LA FHG+ +P G+ F + TH
Sbjct: 628 FKVYIAPATGEVRKLELAQFHGQGIPAGKAFTFTVLTH 665
>AF100673-2|AAU05553.1| 899|Caenorhabditis elegans Hypothetical
protein Y66H1B.2b protein.
Length = 899
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 273 FSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLFILFTH 386
F R L LA FHG+ +P G+ F + TH
Sbjct: 577 FKVYIAPATGEVRKLELAQFHGQGIPAGKAFTFTVLTH 614
>AF100673-1|AAP13733.1| 897|Caenorhabditis elegans Hypothetical
protein Y66H1B.2a protein.
Length = 897
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 273 FSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLFILFTH 386
F R L LA FHG+ +P G+ F + TH
Sbjct: 575 FKVYIAPATGEVRKLELAQFHGQGIPAGKAFTFTVLTH 612
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 61 NQYGRSKSASRRHWSTKRHPSLESSHHCQ*NRRSSLGGPR 180
+ YGR ++SRR + ++ PS S+ H N R+SL P+
Sbjct: 161 DNYGREPASSRRPYPPQQPPS-TSAPHSSPNNRTSLYNPQ 199
>Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical
protein B0240.3 protein.
Length = 1093
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 270 DFSAAATSKNSSTRDLPLAGFHGEV 344
+F +TS +D+PL GFHGE+
Sbjct: 317 NFVLNSTSSFEPLKDVPLCGFHGEI 341
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
protein K08C7.3b protein.
Length = 3672
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +1
Query: 40 STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 144
ST + LN Y ++ WS +P + H C
Sbjct: 67 STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
protein K08C7.3a protein.
Length = 3704
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +1
Query: 40 STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 144
ST + LN Y ++ WS +P + H C
Sbjct: 67 STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +1
Query: 40 STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 144
ST + LN Y ++ WS +P + H C
Sbjct: 67 STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +1
Query: 40 STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 144
ST + LN Y ++ WS +P + H C
Sbjct: 67 STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101
>AL023837-3|CAB63348.2| 283|Caenorhabditis elegans Hypothetical
protein Y37H2C.4 protein.
Length = 283
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +1
Query: 241 ILQSVLANAATSALRLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLLIL 420
IL S A+ A+R +Q I + +L A L+ LFYSLI + +P+ L+
Sbjct: 162 ILGSSFASVIYFAIRCYQYISNQLGTLPTQSQA---LKSLQVQLFYSLILQSAIPSFLMY 218
Query: 421 VP 426
+P
Sbjct: 219 LP 220
>AL021503-2|CAA16421.1| 320|Caenorhabditis elegans Hypothetical
protein Y68A4A.3 protein.
Length = 320
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 370 LFYSLIFMNVVPNLLILVP 426
LFYSLIF + +P LL+ +P
Sbjct: 239 LFYSLIFQSAIPCLLMYLP 257
>Z77656-3|CAB01140.1| 424|Caenorhabditis elegans Hypothetical
protein F07B10.1 protein.
Length = 424
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 506 THNEFXPRVSRIVKEYEAACSSANXKIGTNI 414
T+N+ +V+ V+EY + +S +GTNI
Sbjct: 374 TYNKIHKKVNPDVREYSLSAASMGNSLGTNI 404
>Z74042-14|CAE11313.1| 311|Caenorhabditis elegans Hypothetical
protein T11F9.18 protein.
Length = 311
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +1
Query: 283 RLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLLILVP 426
+L + R ISL R+F+ +++ + H +F S+ + +I +P
Sbjct: 222 KLKASLSQRTISLQRNFLHSLYIQTAVHVIFISIPLGIFFLSFIIWIP 269
>AF326788-1|AAK38269.1| 424|Caenorhabditis elegans CLN-3.1 protein.
Length = 424
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 506 THNEFXPRVSRIVKEYEAACSSANXKIGTNI 414
T+N+ +V+ V+EY + +S +GTNI
Sbjct: 374 TYNKIHKKVNPDVREYSLSAASMGNSLGTNI 404
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,029,892
Number of Sequences: 27780
Number of extensions: 307562
Number of successful extensions: 1125
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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