Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30538.Seq
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 122 3e-29
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 82 5e-17
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 81 1e-16
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 79 6e-16
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 73 4e-14
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 71 2e-13
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 61 1e-10
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 61 1e-10
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 39 6e-04
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 27 2.1
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 26 3.6
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 26 3.6
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 26 4.8
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 25 6.3
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family... 25 6.3
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 25 8.4
SPBC216.06c |swi1||replication fork protection complex subunit S... 25 8.4
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 122 bits (295), Expect = 3e-29
Identities = 60/84 (71%), Positives = 73/84 (86%)
Frame = +1
Query: 256 LEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 435
L+ EHPA KVLVELAQ QD+EVGDGTTSVVIIAAELL+ A+ELVK KIHPT+II+GYRLA
Sbjct: 70 LDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLA 129
Query: 436 CKEAVKYIQDNLTVTVESLGQXRL 507
+EAVK++ D L+ +V+SLG+ L
Sbjct: 130 IREAVKFMTDVLSCSVDSLGKESL 153
Score = 88.2 bits (209), Expect = 8e-19
Identities = 65/153 (42%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Frame = +2
Query: 143 AIANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILKSWKXSILLPKS*WN*HSYKMKKL 322
AIAN+VK SLGPVGLDKMLVDDIGDVTVTNDGATIL K + K++
Sbjct: 32 AIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEHPAGKVLVELAQQQDKEV 91
Query: 323 ----EMVPHL*SSLLLNYLRMQMN**RPRSIQQALSQXTVSPVKKQSSTFRITSQ*Q*SH 490
V + + LL + N P +I VK + +
Sbjct: 92 GDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSV----DS 147
Query: 491 LGRXVSINTAKTTMSSXLIGADADFFSEMVVDA 589
LG+ IN AKT+MSS +IG D+DFFS M VDA
Sbjct: 148 LGKESLINVAKTSMSSKIIGNDSDFFSTMAVDA 180
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 82.2 bits (194), Expect = 5e-17
Identities = 37/68 (54%), Positives = 52/68 (76%)
Frame = +1
Query: 247 IKKLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+K + ++ AAKVLV ++++QD+EVGDGTTSV + AAELL+ A+ +V KIHP II GY
Sbjct: 67 LKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGY 126
Query: 427 RLACKEAV 450
R+A K A+
Sbjct: 127 RIATKTAI 134
Score = 50.4 bits (115), Expect = 2e-07
Identities = 24/41 (58%), Positives = 32/41 (78%), Gaps = 1/41 (2%)
Frame = +2
Query: 137 AAAIANIVKXSLGPVGLDKMLVDDI-GDVTVTNDGATILKS 256
A A+ ++VK +LGP G+DK+L + GD+ VTNDGATILKS
Sbjct: 29 AIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKS 69
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 512 NTAKTTMSSXLIGADADFFSEMVVDA 589
N A+TT+SS ++ + + F+++ VDA
Sbjct: 157 NIARTTLSSKILSQNKNHFAQLAVDA 182
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 81.0 bits (191), Expect = 1e-16
Identities = 38/79 (48%), Positives = 57/79 (72%)
Frame = +1
Query: 247 IKKLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
++++E HPAAK ++ELA+ QDEEVGDGTTSV+I+A E+L A L+ KIHP +I +
Sbjct: 65 LREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSF 124
Query: 427 RLACKEAVKYIQDNLTVTV 483
+ A ++A+ I D +T+ V
Sbjct: 125 KQALEDALSII-DEITLPV 142
Score = 43.2 bits (97), Expect = 3e-05
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +2
Query: 137 AAAIANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILK 253
A A+A++++ LGP + KML+D +G V +TNDG IL+
Sbjct: 28 AKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILR 66
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 78.6 bits (185), Expect = 6e-16
Identities = 34/71 (47%), Positives = 51/71 (71%)
Frame = +1
Query: 247 IKKLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+ ++E EH AK+LV+L++ QD+E+GDGTT VV++A LL+ A+ L+ IHP I GY
Sbjct: 80 LDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGY 139
Query: 427 RLACKEAVKYI 459
AC+ AVK++
Sbjct: 140 EKACQVAVKHL 150
Score = 54.4 bits (125), Expect = 1e-08
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +2
Query: 146 IANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATIL 250
+ANIV+ SLGP GLDK+L+ G++TVTNDGATIL
Sbjct: 46 VANIVRTSLGPRGLDKILISPDGEITVTNDGATIL 80
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 72.5 bits (170), Expect = 4e-14
Identities = 37/73 (50%), Positives = 49/73 (67%)
Frame = +1
Query: 247 IKKLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+K L+ HPAAK LV++A+ QD EVGDGTTSVV+ A ELL+ A V+ + II GY
Sbjct: 70 MKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGY 129
Query: 427 RLACKEAVKYIQD 465
R A + AV I++
Sbjct: 130 RKAAQLAVNKIKE 142
Score = 50.8 bits (116), Expect = 1e-07
Identities = 19/37 (51%), Positives = 31/37 (83%)
Frame = +2
Query: 143 AIANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILK 253
A+ + ++ +LGP+G DK++VDD G+V ++NDGATI+K
Sbjct: 35 AVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMK 71
Score = 29.9 bits (64), Expect = 0.29
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 497 RXVSINTAKTTMSSXLIGADADFFSEMVVDA 589
R + A T M+S LI +++ FF++MVVDA
Sbjct: 156 RDLLTKCASTAMNSKLIRSNSTFFTKMVVDA 186
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 70.5 bits (165), Expect = 2e-13
Identities = 35/74 (47%), Positives = 49/74 (66%)
Frame = +1
Query: 247 IKKLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+K L HPAAK+LV+L+ QD E GDGTTSVVI+A +L A++L+K IHPT I +
Sbjct: 65 LKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESF 124
Query: 427 RLACKEAVKYIQDN 468
+ A V +++N
Sbjct: 125 QRAAGFTVDCMKEN 138
Score = 48.4 bits (110), Expect = 8e-07
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = +2
Query: 137 AAAIANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILK 253
A ++A+ ++ SLGP G+DKM+ G+V +TNDGATILK
Sbjct: 28 ARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILK 66
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 61.3 bits (142), Expect = 1e-10
Identities = 26/82 (31%), Positives = 48/82 (58%)
Frame = +1
Query: 247 IKKLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
I++LE HPAAK++V+ Q Q+ E+GD VV+ ELL A+ +++ + P I GY
Sbjct: 72 IRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGY 131
Query: 427 RLACKEAVKYIQDNLTVTVESL 492
+A ++ +++ +E++
Sbjct: 132 EMALSHTMEVLEEICADKIETV 153
Score = 34.3 bits (75), Expect = 0.014
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +2
Query: 146 IANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILK 253
++ I + SLGP G +K++V+ + +TND ATI++
Sbjct: 38 LSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIR 73
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 60.9 bits (141), Expect = 1e-10
Identities = 25/71 (35%), Positives = 45/71 (63%)
Frame = +1
Query: 247 IKKLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+ +++ ++P A + + A QD+ GDGTTSV ++ ELLK A+ ++ +HP+ I G+
Sbjct: 62 LTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGF 121
Query: 427 RLACKEAVKYI 459
LA EA+ ++
Sbjct: 122 NLAKNEALTFL 132
Score = 38.7 bits (86), Expect = 6e-04
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 137 AAAIANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATIL 250
A + +++K +LGP G KMLVD G + +T DG +L
Sbjct: 25 AIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLL 62
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 38.7 bits (86), Expect = 6e-04
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Frame = +1
Query: 253 KLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRL 432
K + E+ A+++ ++A +E GDGTT+ ++ + V +P + G +L
Sbjct: 94 KDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQL 153
Query: 433 ACKEAVKYIQDNL--TVTVESLGQXRLYQHSQNNHV 534
A V+++Q N T E + Q + + H+
Sbjct: 154 AVDNVVEFLQANKRDITTSEEISQVATISANGDTHI 189
Score = 29.5 bits (63), Expect = 0.39
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 146 IANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILKS 256
+A V +LGP G + ++ G +T DG T+ +S
Sbjct: 54 LARAVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARS 90
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 334 TSVVIIAAELLKNADELVKTKIHPTSIISGY 426
T++++++ LL E + TK+HP+ +S Y
Sbjct: 302 TNLIVVSVALLHQWAEELSTKVHPSKKLSVY 332
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 26.2 bits (55), Expect = 3.6
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +3
Query: 168 PLGQLVWIRCWLTILGM 218
PL +++W+ CW +LG+
Sbjct: 150 PLSKMMWVFCWRWLLGV 166
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 26.2 bits (55), Expect = 3.6
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +3
Query: 168 PLGQLVWIRCWLTILGM 218
PL +++W+ CW +LG+
Sbjct: 150 PLSKMMWVFCWRWLLGV 166
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 168 PLGQLVWIRCWLTILGM 218
PLG+++WI W +LG+
Sbjct: 145 PLGKMMWIFAWRWLLGL 161
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.4 bits (53), Expect = 6.3
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 298 AQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLT 474
A L DE G V+++A + K LV I+P ++ A +K DN+T
Sbjct: 192 ASLLDEGTAAGEAMVMLMANDKKKRKTFLVDKNIYPNTLSVLRTRASGFGIKIELDNIT 250
>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 220 NIPNIVNQHLIQTNWPKGXLYYVCYSRCWPLHFVFSLGLRRILSL 86
N+ I+ Q+L TN G YY Y+R PL F L ++++ L
Sbjct: 235 NLAKIIIQNLY-TN-KSGRFYYPFYARFMPLLRFFPLPIQKLARL 277
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 474 SNSRVTWAGPSLSTQPKQPCHL 539
S + TWA P ST+P QPC +
Sbjct: 3 SQLKSTWA-PVPSTKPSQPCKI 23
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/81 (18%), Positives = 32/81 (39%)
Frame = +1
Query: 292 ELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNL 471
EL + + ++ + L+ N DE ++ I+ CK + + +L
Sbjct: 181 ELKTKNETIISFAKAHILDLIVTLVSNLDEFEHFDVYILEIVYNLIRGCKPSALFSDASL 240
Query: 472 TVTVESLGQXRLYQHSQNNHV 534
T + L L + +QN ++
Sbjct: 241 TNSQTELNSLLLKESTQNRYL 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,746
Number of Sequences: 5004
Number of extensions: 35682
Number of successful extensions: 97
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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