Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30538.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   86   2e-17
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   5e-16
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   5e-16
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  74   8e-14
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      70   2e-12
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               63   1e-10
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              51   8e-07
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              46   2e-05
SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)             39   0.003
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            38   0.008
SB_25900| Best HMM Match : fn3 (HMM E-Value=2e-17)                     32   0.40 
SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_52330| Best HMM Match : MCM (HMM E-Value=0)                         30   1.2  
SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                29   2.2  

>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 37/72 (51%), Positives = 58/72 (80%)
 Frame = +1

Query: 247 IKKLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
           +K +  ++PAAK+LVEL+++QD+EVGDGTTSV ++ +ELLK A++LV  KIHP +I++G+
Sbjct: 68  LKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGW 127

Query: 427 RLACKEAVKYIQ 462
           R + K A K ++
Sbjct: 128 RKSVKAAEKALE 139



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 24/42 (57%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
 Frame = +2

Query: 137 AAAIANIVKXSLGPVGLDKML--VDDIGDVTVTNDGATILKS 256
           A AI ++VK +LGP G+DK+L      G++ VTNDGATILKS
Sbjct: 29  AIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGATILKS 70



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 509 INTAKTTMSSXLIGADADFFSEMVVDA 589
           +N A+TT+SS ++    D F+++ VDA
Sbjct: 157 MNIARTTLSSKILVQHRDHFAKLAVDA 183


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 35/94 (37%), Positives = 63/94 (67%)
 Frame = +1

Query: 247 IKKLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
           +++++ +HPAAK ++E+++ QDEEVGDGTTSV+I+A E +  A+  ++ ++HPT II+ Y
Sbjct: 9   LREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAY 68

Query: 427 RLACKEAVKYIQDNLTVTVESLGQXRLYQHSQNN 528
           RLA  + +  ++  +   ++   + R Y H   N
Sbjct: 69  RLAMDDMIDILKQQIREELQY--RSRTYGHCLRN 100


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 36/92 (39%), Positives = 61/92 (66%)
 Frame = +1

Query: 253 KLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRL 432
           K++ +HPAAK ++E+++ QDEEVGDGTTSV+I+A E +  A+  ++ ++HPT II+ YRL
Sbjct: 208 KIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRL 267

Query: 433 ACKEAVKYIQDNLTVTVESLGQXRLYQHSQNN 528
           A  + +  ++  +   ++   + R Y H   N
Sbjct: 268 AMDDMIDILKQQIREELQY--RSRTYGHCLRN 297


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 74.1 bits (174), Expect = 8e-14
 Identities = 36/77 (46%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
 Frame = +1

Query: 256 LEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 435
           +E +H  AK++VEL++ QD E+GDGTT VV++A  LL++A++L+   IHP  I  GY LA
Sbjct: 79  MEVDHQIAKLMVELSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELA 138

Query: 436 CKEAVKY---IQDNLTV 477
            K A+++   I DN  V
Sbjct: 139 AKIALEHMDSIADNFPV 155



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 26/38 (68%), Positives = 32/38 (84%)
 Frame = +2

Query: 137 AAAIANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATIL 250
           A A+A+I+K SLGP G+DKM+V   G+VTVTNDGATIL
Sbjct: 39  ARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATIL 76


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 30/56 (53%), Positives = 46/56 (82%)
 Frame = +1

Query: 295 LAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQ 462
           L+++QD+EVGDGTTSV ++A+ELLK A++LV  KIHP +I++G+R + K A K ++
Sbjct: 2   LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALE 57



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 509 INTAKTTMSSXLIGADADFFSEMVVDA 589
           +N A+TT+SS ++    D F+++ VDA
Sbjct: 75  MNIARTTLSSKILVQHRDHFAKLAVDA 101


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 27/75 (36%), Positives = 47/75 (62%)
 Frame = +1

Query: 241 HNIKKLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIIS 420
           + ++  + +HP A ++  +A  QD+  GDGTTS V+I  ELLK AD  V   +HP  +  
Sbjct: 164 NGVQNSQIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTE 223

Query: 421 GYRLACKEAVKYIQD 465
           G+ +A K+A++ +++
Sbjct: 224 GFEVAKKKALEVLEE 238


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 22/37 (59%), Positives = 29/37 (78%)
 Frame = +2

Query: 137 AAAIANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATI 247
           A A+A+ ++ SLGP G+DKM+    GDVT+TNDGATI
Sbjct: 33  AKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI 69


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 19/35 (54%), Positives = 28/35 (80%)
 Frame = +2

Query: 146 IANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATIL 250
           IA+ V+ +LGP G+DK++VD  G  T++NDGATI+
Sbjct: 667 IADAVRTTLGPRGMDKLIVDGRGKATISNDGATII 701



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 247 IKKLEXEHPAAKVLVELAQLQDEE 318
           I  L+  HPAAK LV++A+ QD E
Sbjct: 701 INLLDIVHPAAKTLVDIAKSQDAE 724


>SB_30876| Best HMM Match : Ribosomal_S16 (HMM E-Value=7.1)
          Length = 131

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +2

Query: 491 LGRXVSINTAKTTMSSXLIGADADFFSEMVVDA 589
           LGR   ++ A T +SS LIG   DFF+ M+VDA
Sbjct: 8   LGRDCIVSAANTALSSKLIGQQGDFFANMIVDA 40


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +2

Query: 155 IVKXSLGPVGLDKMLVDDIGDVTVTNDGATILKS 256
           I+K S GP GLD ML    G++ +TN G+ IL+S
Sbjct: 15  ILKKSFGPNGLDVMLRSSSGNILITNSGSMILES 48


>SB_25900| Best HMM Match : fn3 (HMM E-Value=2e-17)
          Length = 197

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
 Frame = +1

Query: 310 DEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYI---------Q 462
           DE+V DG     I+AAE + +    +     PTS+ +GY +A    V+ I         +
Sbjct: 98  DEDVPDGAP---IVAAEAVNSTSLRINCTTLPTSVANGYVIAFNVYVESIDGSHKLIEKK 154

Query: 463 DNLTVTVESLGQXRLYQ 513
           D LT  V SL +  +YQ
Sbjct: 155 DGLTSVVPSLQKFTMYQ 171


>SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +1

Query: 358 ELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNL 471
           E +  A+  ++ ++HPT II+ YRLA  + +  ++  +
Sbjct: 3   EFMSVAEPFLEQQMHPTQIIAAYRLAMDDMIDILKQQI 40


>SB_52330| Best HMM Match : MCM (HMM E-Value=0)
          Length = 368

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 191 KMLVDDIGDVTVTNDGATI-LKSWKXS 268
           KMLVD + D  + NDG  + LKSWK S
Sbjct: 316 KMLVDKVLDRLIHNDGVILELKSWKES 342


>SB_3351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 518 AKTTMSSXLIGADADFFSEMVVDA 589
           A T +SS LI    +FF++MVVDA
Sbjct: 28  AATALSSKLIATQKEFFAKMVVDA 51


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 146 IANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILKS 256
           +A+ V  +LGP G + ++    G   +T DG T+ K+
Sbjct: 79  LADAVAVTLGPKGKNVIIEQSFGGPKITKDGVTVAKA 115



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +1

Query: 253 KLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIIS 420
           K + ++  A+++ ++A   +EE GDGTT+  ++A  +       V    +P  + S
Sbjct: 119 KDKYQNIGARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVSKGANPQEVSS 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,358,125
Number of Sequences: 59808
Number of extensions: 281529
Number of successful extensions: 536
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)