Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30538.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.3  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   9.2  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 250 KKLEXEHPAAKVLVELAQLQDEEVGDGTTS 339
           +K   EHP  K+L EL    D  + D + S
Sbjct: 97  EKRYQEHPNGKILRELQTDYDRRLHDNSPS 126


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 233 DGATILKSWKXSILLPKS*WN*HSYKMKKLEMVPH 337
           D  T    WK   ++  +    HS++MK + +V H
Sbjct: 328 DTRTSTSLWKDKAMIEANVAVLHSFQMKNVTIVDH 362


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 81 RQRXSYSRHFLLYF*HKIHFKIAVT 7
          RQR SY+R+  L    + HF   +T
Sbjct: 10 RQRTSYTRYQTLELEKEFHFNRYLT 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,712
Number of Sequences: 438
Number of extensions: 2452
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)