Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30538.Seq
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 128 4e-30
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 89 3e-18
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 78 4e-15
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 77 1e-14
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 73 1e-13
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 69 2e-12
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 67 1e-11
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 65 3e-11
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 56 1e-08
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 56 2e-08
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 42 3e-04
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 36 0.027
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 33 0.19
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 32 0.33
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 31 0.44
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 31 0.44
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 31 0.58
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 31 0.58
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 31 0.58
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 31 0.58
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 28 5.4
At3g49900.1 68416.m05455 BTB/POZ domain-containing protein conta... 27 9.5
At2g46640.1 68415.m05818 hypothetical protein and genefinder; e... 27 9.5
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu... 27 9.5
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu... 27 9.5
At1g05790.1 68414.m00605 lipase class 3 family protein contains ... 27 9.5
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 128 bits (308), Expect = 4e-30
Identities = 77/151 (50%), Positives = 90/151 (59%)
Frame = +1
Query: 55 MSTIAAPLSAAGTRSCGDPVRTQNVMASSGYSKHSKEXPWASWSG*DAG*RYWGCYSH*R 234
MS A +G R G VRTQNVMA S K
Sbjct: 1 MSISAQNPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITND 60
Query: 235 WCHNIKKLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSI 414
++ LE EHPAAKVLVELA+LQD EVGDGTTSVVI+AAELLK A++LV+ KIHPTSI
Sbjct: 61 GATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSI 120
Query: 415 ISGYRLACKEAVKYIQDNLTVTVESLGQXRL 507
ISGYRLA +E+ KYI++ L VE LG+ L
Sbjct: 121 ISGYRLAMRESCKYIEEKLVTKVEKLGKVPL 151
Score = 71.3 bits (167), Expect = 4e-13
Identities = 32/37 (86%), Positives = 36/37 (97%)
Frame = +2
Query: 143 AIANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILK 253
A++NIVK SLGPVGLDKMLVDDIGDVT+TNDGATIL+
Sbjct: 30 AVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILR 66
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = +2
Query: 491 LGRXVSINTAKTTMSSXLIGADADFFSEMVVDA 589
LG+ IN AKT+MSS LI D+DFF+ +VV+A
Sbjct: 146 LGKVPLINCAKTSMSSKLISGDSDFFANLVVEA 178
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 88.6 bits (210), Expect = 3e-18
Identities = 38/63 (60%), Positives = 56/63 (88%)
Frame = +1
Query: 247 IKKLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+K L ++PAAKVLV+++++QD+EVGDGTTSVV++A ELL+ A++LV +KIHP +II+GY
Sbjct: 66 LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGY 125
Query: 427 RLA 435
R+A
Sbjct: 126 RMA 128
Score = 45.2 bits (102), Expect = 3e-05
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 3/43 (6%)
Frame = +2
Query: 137 AAAIANIVKXSLGPVGLDKMLVDDIG---DVTVTNDGATILKS 256
A AI+++VK +LGP G+DK+L G VTVTNDGATILKS
Sbjct: 27 AMAISDLVKSTLGPKGMDKIL-QSTGRGHAVTVTNDGATILKS 68
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 78.2 bits (184), Expect = 4e-15
Identities = 35/82 (42%), Positives = 55/82 (67%)
Frame = +1
Query: 247 IKKLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+ +LE +HPAAK+LV A+ Q EE+GDG + A ELL+NA+EL++ +HP+ IISGY
Sbjct: 73 VNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGY 132
Query: 427 RLACKEAVKYIQDNLTVTVESL 492
A +AV+ ++ + E++
Sbjct: 133 TKAVSKAVEILEQLVETGSETM 154
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/35 (42%), Positives = 26/35 (74%)
Frame = +2
Query: 146 IANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATIL 250
++ I + SLGP G++KM+++ + + VTND ATI+
Sbjct: 39 LSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIV 73
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 76.6 bits (180), Expect = 1e-14
Identities = 36/80 (45%), Positives = 56/80 (70%)
Frame = +1
Query: 247 IKKLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+K L+ HPAAK+LV++A+ QD EVGDGTT+VV++AAE LK A ++ +H ++I Y
Sbjct: 69 MKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSY 128
Query: 427 RLACKEAVKYIQDNLTVTVE 486
R A A+ +++ L V++E
Sbjct: 129 RTASTLAIAKVKE-LAVSIE 147
Score = 51.2 bits (117), Expect = 5e-07
Identities = 20/37 (54%), Positives = 31/37 (83%)
Frame = +2
Query: 143 AIANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILK 253
A+ ++V+ +LGP G+DK++ DD G VT++NDGATI+K
Sbjct: 34 AVGDVVRTTLGPRGMDKLIHDDKGSVTISNDGATIMK 70
Score = 33.9 bits (74), Expect = 0.083
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +2
Query: 518 AKTTMSSXLIGADADFFSEMVVDA 589
A TT+SS LIG + +FF+ MVVDA
Sbjct: 162 AATTLSSKLIGGEKEFFATMVVDA 185
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 72.9 bits (171), Expect = 1e-13
Identities = 31/80 (38%), Positives = 56/80 (70%)
Frame = +1
Query: 247 IKKLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+++L+ HPAAK ++EL++ QDEEVGDGTTSV+++A E+L A+ ++ HPT I Y
Sbjct: 65 LRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAY 124
Query: 427 RLACKEAVKYIQDNLTVTVE 486
A ++++ + D + ++++
Sbjct: 125 IKALEDSIA-VLDKIAMSID 143
Score = 40.7 bits (91), Expect = 7e-04
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +2
Query: 143 AIANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILK 253
A+A+I++ +LGP + KML+D G + VTNDG IL+
Sbjct: 30 AVADIIRTTLGPRSMLKMLLDAGGGIVVTNDGNAILR 66
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 68.9 bits (161), Expect = 2e-12
Identities = 37/80 (46%), Positives = 48/80 (60%)
Frame = +1
Query: 247 IKKLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+ K+E PAAK+LVEL++ QD GDGTT+VV+IA LLK L+ IHPT I
Sbjct: 74 LNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSL 133
Query: 427 RLACKEAVKYIQDNLTVTVE 486
AC +A+ I + V VE
Sbjct: 134 HKACGKAID-ILTAMAVPVE 152
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/48 (50%), Positives = 33/48 (68%)
Frame = +2
Query: 137 AAAIANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILKSWKXSILLP 280
A A+++ V+ SLGP G+DKM+ G+V +TNDGATIL K +L P
Sbjct: 37 ARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILN--KMEVLQP 82
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 66.9 bits (156), Expect = 1e-11
Identities = 28/72 (38%), Positives = 51/72 (70%)
Frame = +1
Query: 247 IKKLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+++++ ++ AK++VEL++ QD E+GDGTT VV++A LL+ A+ + IHP I GY
Sbjct: 74 LEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGY 133
Query: 427 RLACKEAVKYIQ 462
+A + AV++++
Sbjct: 134 EMASRVAVEHLE 145
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +2
Query: 143 AIANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILK 253
A+A I++ SLGP G+DKML GD+T+TNDGATIL+
Sbjct: 39 AVARILRSSLGPKGMDKMLQGPDGDITITNDGATILE 75
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 65.3 bits (152), Expect = 3e-11
Identities = 28/69 (40%), Positives = 48/69 (69%)
Frame = +1
Query: 256 LEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 435
++ ++ AK++VEL++ QD E+GDGTT VV++A LL+ A+ + IHP I GY +A
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
Query: 436 CKEAVKYIQ 462
+ AV++++
Sbjct: 61 SRVAVEHLE 69
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 56.4 bits (130), Expect = 1e-08
Identities = 24/79 (30%), Positives = 47/79 (59%)
Frame = +1
Query: 247 IKKLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+K+++ ++P A ++ A QD+ GDGTTS VI EL+K ++ + +HP ++ G+
Sbjct: 63 LKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGF 122
Query: 427 RLACKEAVKYIQDNLTVTV 483
+A + ++++ DN V
Sbjct: 123 EIAKRATLQFL-DNFKTPV 140
Score = 40.7 bits (91), Expect = 7e-04
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +2
Query: 137 AAAIANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILK 253
A + +++K +LGP G KMLV GD+ +T DG T+LK
Sbjct: 26 AKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLK 64
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 55.6 bits (128), Expect = 2e-08
Identities = 23/79 (29%), Positives = 46/79 (58%)
Frame = +1
Query: 247 IKKLEXEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 426
+K+++ ++P A ++ A QD+ GDGTTS VI EL+K ++ + +HP ++ G+
Sbjct: 63 LKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGF 122
Query: 427 RLACKEAVKYIQDNLTVTV 483
+A + ++++ T V
Sbjct: 123 EIAKRATLQFLDTFKTPVV 141
Score = 40.7 bits (91), Expect = 7e-04
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +2
Query: 137 AAAIANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILK 253
A + +++K +LGP G KMLV GD+ +T DG T+LK
Sbjct: 26 AKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLK 64
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/66 (30%), Positives = 36/66 (54%)
Frame = +1
Query: 265 EHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKE 444
E+ A ++ E+A +E GDGTT+ +I+A E++K + + S+ +G KE
Sbjct: 98 ENAGATLIQEVAIKMNESAGDGTTTAIILAREMIKAGSLAIAFGANAVSVKNGMNKTVKE 157
Query: 445 AVKYIQ 462
V+ +Q
Sbjct: 158 LVRVLQ 163
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 35.5 bits (78), Expect = 0.027
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +1
Query: 265 EHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKE 444
E+ A ++ E+A ++ GDGTT+ I+A E++K+ V + +P S+ G +
Sbjct: 111 ENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQG 170
Query: 445 AVKYIQ 462
++ +Q
Sbjct: 171 LIEELQ 176
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 265 EHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKE 444
E+ AK++ + A ++ GDGTT+ V++A L+ ++V +P I G K
Sbjct: 118 ENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTKA 177
Query: 445 AV 450
V
Sbjct: 178 LV 179
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 146 IANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILK 253
+A++V +LGP G + +L G + NDG T+ +
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAR 109
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 31.9 bits (69), Expect = 0.33
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 146 IANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILKS 256
+A VK ++GP G + ++ G +T DG T+ KS
Sbjct: 53 VAEAVKVTMGPKGRNVIIESSYGGPKITKDGVTVAKS 89
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +1
Query: 265 EHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKE 444
E+ AK++ + A ++ GDGTT+ V++A + ++V +P I G K
Sbjct: 118 ENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKA 177
Query: 445 AVKYIQ 462
V ++
Sbjct: 178 LVNELK 183
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 146 IANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILK 253
+A++V +LGP G + +L G + NDG T+ +
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAR 109
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 137 AAAIANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILK 253
A +A ++ +LGP G + +L + G + NDG T+LK
Sbjct: 59 ADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLK 97
Score = 30.7 bits (66), Expect = 0.77
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 247 IKKLEXEHPAAKVLVELAQLQ----DEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSI 414
+K++E E P V V+L + ++ GDG+T+ +I+A L+ +++ +P +
Sbjct: 96 LKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQV 155
Query: 415 ISGYRLACKEAV 450
G K V
Sbjct: 156 ARGIEKTTKALV 167
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 31.1 bits (67), Expect = 0.58
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 146 IANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILKS 256
+A+ VK ++GP G + ++ G VT DG T+ KS
Sbjct: 53 LADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKS 89
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 31.1 bits (67), Expect = 0.58
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 146 IANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILKS 256
+A+ VK ++GP G + ++ G VT DG T+ KS
Sbjct: 54 LADAVKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKS 90
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +1
Query: 277 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKY 456
A ++ ++A ++ GDGTT ++ + + V ++ + G +LA V
Sbjct: 102 ASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGIKLAVDTVVTN 161
Query: 457 IQD--NLTVTVESLGQ 498
+Q + T E + Q
Sbjct: 162 LQSRARMISTSEEIAQ 177
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 265 EHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKE 444
E+ AK++ + A ++ GDGTT+ V++A + ++V +P I G K
Sbjct: 122 ENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKA 181
Query: 445 AV 450
V
Sbjct: 182 LV 183
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 146 IANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILK 253
+A++V +LGP G + +L G + NDG T+ +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAR 113
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 265 EHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKE 444
E+ AK++ + A ++ GDGTT+ V++A + ++V +P I G K
Sbjct: 122 ENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKA 181
Query: 445 AV 450
V
Sbjct: 182 LV 183
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 146 IANIVKXSLGPVGLDKMLVDDIGDVTVTNDGATILK 253
+A++V +LGP G + +L G + NDG T+ +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAR 113
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -2
Query: 165 LFTMFAIAA-AGHYILCSHWVSAGSCPCXRQRXSYSRH--FLLYF 40
+F F AA G ++L + W+ G+ C ++R S + FL +F
Sbjct: 1 MFKPFGFAAETGSHLLTTQWLQLGNSLCLKERISIAMQVTFLAFF 45
>At3g49900.1 68416.m05455 BTB/POZ domain-containing protein contains
BTB/POZ domain, INTERPRO:IPR000210
Length = 517
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 471 HSNSRVTWAGPSLSTQPKQPCHLX*LELMQISSR 572
H +S ++ + SLS PKQP +L M++ SR
Sbjct: 22 HHSSSLSSSSSSLSLSPKQPINLSSSPSMELESR 55
>At2g46640.1 68415.m05818 hypothetical protein and genefinder;
expression supported by MPSS
Length = 310
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 301 QLQDEEVGDGTTSVVIIAAELLKNADE 381
++ D+E G G V+I ++KN D+
Sbjct: 65 EMDDDECGSGDLDYVVIDGSIIKNVDQ 91
>At2g27110.2 68415.m03258 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +1
Query: 355 AELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLTVTVE----SLGQXR 504
A+ + DE V H +SI Y C+EA+KY ++ +T E +LGQ R
Sbjct: 578 AKSMVELDEHVSENGHDSSI-HRYNHLCREAIKYAEEG-AITAEAYNIALGQLR 629
>At2g27110.1 68415.m03257 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +1
Query: 355 AELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLTVTVE----SLGQXR 504
A+ + DE V H +SI Y C+EA+KY ++ +T E +LGQ R
Sbjct: 578 AKSMVELDEHVSENGHDSSI-HRYNHLCREAIKYAEEG-AITAEAYNIALGQLR 629
>At1g05790.1 68414.m00605 lipase class 3 family protein contains
Pfam profile PF01764: Lipase
Length = 687
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 584 LQPSPRRNLHQLQLX*MTWLFW 519
+ SP +N HQ +L TWL+W
Sbjct: 75 IMDSPTQNNHQRKLKYKTWLWW 96
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,339,666
Number of Sequences: 28952
Number of extensions: 193038
Number of successful extensions: 439
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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