Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30536.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   3.4  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   6.0  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   6.0  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 395 WYTNICHVNPFDLHPXKCR 339
           W   +C++N  D  P  CR
Sbjct: 98  WEGALCNINTDDCSPNPCR 116


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 346 FXGWRSNGFTWHMFVYHWEXQMESK 420
           F GW ++G  W      W+   E+K
Sbjct: 478 FAGWVTDGNNWCSPYIGWQKVYENK 502


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 541 APGXAARPATSPDTVF 494
           +PG  +  + SPDTVF
Sbjct: 196 SPGIYSEQSLSPDTVF 211


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,555
Number of Sequences: 336
Number of extensions: 2450
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)