Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30536.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    46   4e-06
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    30   0.22 
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    27   2.7  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 46.0 bits (104), Expect = 4e-06
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = +2

Query: 119 VEVTNXFCVPHKEHADQVXAELNYAMDVYXLNRRVNSSESIVGWW 253
           +E+ + F VPH E ++QV  E+ Y   +Y L+ + N  E +VGW+
Sbjct: 62  IEIKSCFAVPHNESSEQVEVEMEYHRAMYHLHLKANPREVVVGWY 106



 Score = 33.1 bits (72), Expect = 0.032
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 1   ISVKVHPVVLFQIVDAYERRNADSHRVIGHLIG 99
           +++ + P VLF I+D   R++ ++ RVIG L+G
Sbjct: 21  LNIVIEPAVLFSILDHSTRKSENNQRVIGTLLG 53


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYER-RNADSHRVIGHLIG 99
           V VHP+VL   VD+Y R       RV+G L+G
Sbjct: 17  VIVHPLVLLSAVDSYNRSAKGTKRRVVGILLG 48


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = +1

Query: 337 LRHFXGWRSNGFT-WHMFVYHW 399
           LRH  GWRSN F  W   +  W
Sbjct: 133 LRHREGWRSNAFVLWAFLMSLW 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,295
Number of Sequences: 5004
Number of extensions: 36988
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)