Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30536.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23...    48   6e-06
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124...    36   0.025
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130...    33   0.23 
05_04_0017 + 17180991-17181074,17181657-17181759,17181794-17182014     30   1.6  
02_05_1027 - 33602170-33602622,33602912-33603013                       30   1.6  
11_01_0749 - 6305087-6307522                                           29   2.8  
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810...    28   6.5  

>05_01_0034 -
           228939-229028,229117-229230,229309-229430,229827-230056,
           230458-230537,230641-230859
          Length = 284

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = +2

Query: 113 GVVEVTNXFCVPHKEHADQVXAELNYAMDVYXLNRRVNSSESIVGWW 253
           G V V N + VPH E  DQV  ++ Y  ++Y  + +VN  E IVGW+
Sbjct: 55  GTVHVRNSYVVPHNESPDQVALDIEYHHNMYASHHKVNPKEVIVGWF 101



 Score = 34.3 bits (75), Expect = 0.075
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +1

Query: 4   SVKVHPVVLFQIVDAYERRNADSHRVIGHLIG 99
           S +V  VV+F I D+Y RR   + RVIG L+G
Sbjct: 18  SARVEAVVVFNICDSYVRRPDQAERVIGTLLG 49



 Score = 31.1 bits (67), Expect = 0.70
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 259 GNEVTNXSSVIHEYYSRECREPVH 330
           G  V+  S++IH++YSRE + P+H
Sbjct: 104 GFGVSGGSTLIHDFYSREVQSPIH 127


>04_03_0650 -
           18411588-18411645,18412020-18412172,18412340-18412407,
           18412499-18412600,18412695-18412766,18412843-18412891,
           18412971-18413104,18413488-18413554,18414471-18414574,
           18414677-18414793,18415538-18415647,18415763-18415772
          Length = 347

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 116 VVEVTNXFCVPHKEHADQVXAE-LNYAMDVYXLNRRVNSSESIVGWW 253
           V+EVTN F  P +E  ++  A+  NY +++    R VN   + VGW+
Sbjct: 69  VLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVGWY 115


>04_04_1468 +
           33811471-33811657,33811888-33811980,33812899-33813027,
           33813089-33813166,33813377-33813435,33813522-33813644,
           33814225-33814282,33814383-33814468,33814564-33814635
          Length = 294

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERRNADSH-RVIGHLIG 99
           V VHP+VL  IVD Y R   D+  RV+G L+G
Sbjct: 17  VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLG 48


>05_04_0017 + 17180991-17181074,17181657-17181759,17181794-17182014
          Length = 135

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 465 PEIVGLQVCQKTVSGEVAGRAALPGARTWAQVM 563
           PE++G+    +T  GE  GR     AR W +V+
Sbjct: 36  PELIGVCTAARTGGGEGGGRGVAVAARGWLEVV 68


>02_05_1027 - 33602170-33602622,33602912-33603013
          Length = 184

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -3

Query: 254 PTNQQYFQRN*LFCSAXKHPSRN*VPLXLDRHVLC-VARRXSWLLPPLLCRSCPIRCPIT 78
           P   +Y+ RN    S   H     V   LD + LC V R   +LLP LL R C +  P+ 
Sbjct: 124 PPTVEYYSRNPHQNSHHDHEQHG-VLKYLDLNNLCLVIRAPLFLLPDLLLRLCIVALPLC 182

Query: 77  L 75
           L
Sbjct: 183 L 183


>11_01_0749 - 6305087-6307522
          Length = 811

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 236 SIVGWWGXAMK*PTXPLLYTSIIPVNAVSLSMXXCDTSXGGGRMGLRGICLC 391
           S+V W G      T  L++  ++P   V++S   C    G   +   G C+C
Sbjct: 314 SLVCWGGHEFN-ATNRLVFDRVLPGPCVTMSSCRCGVLPGSANLCASGRCIC 364


>01_05_0320 -
           20874691-20875230,20879337-20879590,20880014-20881087,
           20881259-20881511,20881548-20882369
          Length = 980

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 99  ARATKEWWK*PTXSACHTKN-MPIKSK 176
           A  +KEWW     +ACH  N +P+K K
Sbjct: 508 AGLSKEWWGEAVLTACHVLNKIPMKHK 534


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,136,728
Number of Sequences: 37544
Number of extensions: 272886
Number of successful extensions: 726
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)