Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30536.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.40 
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.40 
SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)             28   6.6  
SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)                    27   8.7  

>SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 119 VEVTNXFCVP-HKEHADQVXAELNYAMDVYXLNRRVNSSESIVGWW 253
           +E+TN F  P +K   D+   ++NY M+V    R VN     VGW+
Sbjct: 55  LEITNCFPFPSNKAGDDEDDDDVNYQMEVMRRLRAVNIDHLHVGWY 100


>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 4   SVKVHPVVLFQIVDAYER--RNADSHRVIGHLIGHERQ 111
           +V VHP+VL  +VD + R  +     RV+G L+G  R+
Sbjct: 10  TVVVHPIVLLSVVDHFNRMGKVGSQKRVVGVLLGSRRK 47


>SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 396 LGVPNGKQGXMF--XPXDVXLTCYEPEIVGLQVCQKTVS 506
           +GVP   +G MF   P +V LT   PE VG+ V Q+T S
Sbjct: 30  MGVPGKTEGTMFSQIPCEVKLT--GPEKVGVDVLQRTKS 66


>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
          Length = 419

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 6   CEGPSCCFISNCGRIRTSKCRF 71
           C G + CFI    R R  KCRF
Sbjct: 78  CRGSNDCFIDKVHRNRCQKCRF 99


>SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)
          Length = 861

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
 Frame = +1

Query: 340 RHFXG--WRSNGFTWHMFVYHW 399
           RH+ G  W   GFTWH   + W
Sbjct: 792 RHYGGFTWHYGGFTWHYGGFTW 813


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,114,198
Number of Sequences: 59808
Number of extensions: 313248
Number of successful extensions: 1056
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)