Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30536.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    34   0.067
Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    29   2.5  
Z81550-3|CAD44141.1|  548|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z81550-2|CAB04478.2|  548|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U49795-1|AAB03859.1|  673|Caenorhabditis elegans DNA-binding pro...    27   7.7  
U49794-1|AAB03858.1|  673|Caenorhabditis elegans lag-1 protein.        27   7.7  
AF100663-8|AAM98006.1|  671|Caenorhabditis elegans Lin-12 and gl...    27   7.7  
AF100663-7|AAC68978.3|  673|Caenorhabditis elegans Lin-12 and gl...    27   7.7  

>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 34.3 bits (75), Expect = 0.067
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +2

Query: 107 DKGVVEVTNXFCVPHKEHADQVXAELNYAMDVYXLNRRVNSSESIVGWW 253
           +KG ++VTN F +P  E  D +  +  +   +    ++ + +E  VGW+
Sbjct: 46  EKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTSPNEQPVGWF 94


>Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical
           protein F36H1.9 protein.
          Length = 160

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 132 TXSACHTKNMPIKSKRNLITRWMFTS 209
           T  ACHT  M +  K+N IT W +++
Sbjct: 55  TLVACHTLQMFLAEKKNTITHWKYST 80


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYER--RNADSHRVIGHLIG 99
           V VHP+VL  +VD + R  +     RV+G L+G
Sbjct: 41  VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLG 73


>Z81550-3|CAD44141.1|  548|Caenorhabditis elegans Hypothetical
           protein F55F3.2b protein.
          Length = 548

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 595 SSXALKGLAADITCAQVR-APGXAARPATSPDTVFWHTCRPTISG 464
           S    K LA D T   +  +P    +P   PD++FW    PTI G
Sbjct: 498 SPLPFKWLAMDSTNRFLSFSPNPKMQPHYHPDSMFWVCTAPTIDG 542


>Z81550-2|CAB04478.2|  548|Caenorhabditis elegans Hypothetical
           protein F55F3.2a protein.
          Length = 548

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 595 SSXALKGLAADITCAQVR-APGXAARPATSPDTVFWHTCRPTISG 464
           S    K LA D T   +  +P    +P   PD++FW    PTI G
Sbjct: 498 SPLPFKWLAMDSTNRFLSFSPNPKMQPHYHPDSMFWVCTAPTIDG 542


>U49795-1|AAB03859.1|  673|Caenorhabditis elegans DNA-binding
           protein LAG-1 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 96  WARATKEWWK*PTXSACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 248
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643


>U49794-1|AAB03858.1|  673|Caenorhabditis elegans lag-1 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 96  WARATKEWWK*PTXSACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 248
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643


>AF100663-8|AAM98006.1|  671|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein1, isoform b protein.
          Length = 671

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 96  WARATKEWWK*PTXSACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 248
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV
Sbjct: 591 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 641


>AF100663-7|AAC68978.3|  673|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein1, isoform a protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 96  WARATKEWWK*PTXSACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 248
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,405,343
Number of Sequences: 27780
Number of extensions: 225126
Number of successful extensions: 548
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)