Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30536.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39990.1 68415.m04914 eukaryotic translation initiation facto...    50   1e-06
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su...    39   0.002
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su...    39   0.003
At1g10840.1 68414.m01246 eukaryotic translation initiation facto...    36   0.027
At2g46280.2 68415.m05756 eukaryotic translation initiation facto...    30   1.3  
At2g46280.1 68415.m05755 eukaryotic translation initiation facto...    30   1.3  
At5g50860.1 68418.m06302 protein kinase family protein contains ...    29   2.4  
At2g46290.1 68415.m05758 eukaryotic translation initiation facto...    28   5.4  
At4g35900.1 68417.m05099 DNA-binding protein-related weak simila...    27   9.5  
At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)...    27   9.5  

>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
           subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
           SP|O04202 Eukaryotic translation initiation factor 3
           subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
           {Arabidopsis thaliana}; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 293

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 19/47 (40%), Positives = 32/47 (68%)
 Frame = +2

Query: 113 GVVEVTNXFCVPHKEHADQVXAELNYAMDVYXLNRRVNSSESIVGWW 253
           G V++ N + VPH E +DQV  +++Y  ++   + +VNS E+IVGW+
Sbjct: 64  GTVDIRNSYAVPHNESSDQVAVDIDYHHNMLASHLKVNSKETIVGWY 110



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
 Frame = +1

Query: 1   ISVKVHPVVLFQIVDAYERRNADSHRVIGHLIGHERQRSGGSNQLXLRATQRTCRSSXSG 180
           ++ ++HP+V+F + D + RR   + RVIG L+G      G  +     A      S    
Sbjct: 26  LTARIHPLVIFNVCDCFVRRPDSAERVIGTLLG-SILPDGTVDIRNSYAVPHNESSDQVA 84

Query: 181 T*L--RDGCLXAEQKSQFL*KYCWLVGXGNEVTNXSSVIHEYYSRECREPVH 330
             +      L +  K             G  V   SS+IH++Y+RE   P+H
Sbjct: 85  VDIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIH 136


>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26s proteasome regulatory subunit s12
           (proteasome subunit p40) (mov34 protein) SP:P26516 from
           [Mus musculus]; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 308

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +2

Query: 110 KGVVEVTNXFCVPHKEHADQVXA---ELNYAMDVYXLNRRVNSSESIVGWWGXAMK 268
           +GVV+VTN + VP +E          + NY   ++ + +R+N+ E +VGW+    K
Sbjct: 52  RGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTGPK 107



 Score = 33.5 bits (73), Expect = 0.11
 Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERRNAD-SHRVIGHLIG 99
           V VHP+VL  IVD Y R   D S RV+G L+G
Sbjct: 17  VVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLG 48


>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26S proteasome regulatory subunit S12
           (MOV34) SP:P26516 from [Mus musculus]
          Length = 310

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +2

Query: 110 KGVVEVTNXFCVPHKEHADQVXA---ELNYAMDVYXLNRRVNSSESIVGWWGXAMK 268
           +G V+VTN + VP +E          + NY   ++ + +R+N+ E IVGW+    K
Sbjct: 52  RGTVDVTNSYAVPFEEDDKDTSIWFLDHNYHESMFHMFKRINAKEHIVGWYSTGPK 107



 Score = 33.1 bits (72), Expect = 0.14
 Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERRNAD-SHRVIGHLIG 99
           V VHP+VL  IVD Y R   D S RV+G L+G
Sbjct: 17  VIVHPLVLLSIVDHYNRVAKDTSKRVVGVLLG 48


>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
           subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
           SP|Q9C5Z2 Eukaryotic translation initiation factor 3
           subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
           {Arabidopsis thaliana}; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 337

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 116 VVEVTNXFCVPHKEHADQVXAE-LNYAMDVYXLNRRVNSSESIVGWW 253
           V+EVTN F  P ++  +++ A+  NY +++    R VN   + VGW+
Sbjct: 59  VLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWY 105


>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
           subunit 2 / TGF-beta receptor interacting protein 1 /
           eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
           eukaryotic translation initiation factor 3 subunit 2
           (SP:Q38884) {Arabidopsis thaliana}; contains Pfam
           PF00400: WD domain, G-beta repeat (5 copies)
          Length = 328

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 290 YTSIIPVNAVSLSMXXCDTSXGGGR 364
           YT+++PVNAVSLS        GGG+
Sbjct: 231 YTTVVPVNAVSLSPLLNHVVLGGGQ 255


>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
           subunit 2 / TGF-beta receptor interacting protein 1 /
           eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
           eukaryotic translation initiation factor 3 subunit 2
           (SP:Q38884) {Arabidopsis thaliana}; contains Pfam
           PF00400: WD domain, G-beta repeat (5 copies)
          Length = 328

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 290 YTSIIPVNAVSLSMXXCDTSXGGGR 364
           YT+++PVNAVSLS        GGG+
Sbjct: 231 YTTVVPVNAVSLSPLLNHVVLGGGQ 255


>At5g50860.1 68418.m06302 protein kinase family protein contains
           PF00069: Protein kinase domain
          Length = 580

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 578 GTRRRHNLRPGPSPGQXRSTRDLPRHS 498
           G +R+HN    P P   R+T DLP  S
Sbjct: 11  GDKRKHNNPDEPPPADLRNTEDLPSSS 37


>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
           subunit 2, putative / eIF-3 beta, putative / eIF3i,
           putative strong similarity to SP|Q38884 Eukaryotic
           translation initiation factor 3 subunit 2 (eIF-3 beta)
           (eIF3 p36) (eIF3i) (TGF-beta receptor interacting
           protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
           Pfam PF00400: WD domain, G-beta repeat (5
           copies)|19799885|gb|AU231175.1|AU231175
          Length = 355

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 290 YTSIIPVNAVSLSMXXCDTSXGGGR 364
           YT+++PVNAV++S        GGG+
Sbjct: 258 YTTVVPVNAVAMSPLLNHVVLGGGQ 282


>At4g35900.1 68417.m05099 DNA-binding protein-related weak
           similarity to DNA-binding factor gmlip15 [Zea mays]
           GI:14289167
          Length = 245

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = -3

Query: 422 TLLSIWXSQWYTNICHVNPFDLHPXKCRRXXWTGSRHSRE*YSCITEXWLVTSL---PXP 252
           T+  +W      +I H+N    HP       + G  H  +  + I + +L  SL   P P
Sbjct: 62  TMEEVWNDINLASIHHLNRHSPHPQHNHEPRFRGQNHHNQNPNSIFQDFLKGSLNQEPAP 121

Query: 251 TNQ 243
           T+Q
Sbjct: 122 TSQ 124


>At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)
           (FAS1) identical to FAS1 [Arabidopsis thaliana]
           GI:4887626
          Length = 815

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
 Frame = +1

Query: 262 NEVTNXSSVIHEYYSRECREPVHXXLR-HFXGWRSNGFTWHMFVYHWEXQMESK 420
           NE+      I   +S  C   V    R HF  WR  G        HW  + + K
Sbjct: 373 NEIGKVVQAIDNAFSTTCEATVDDIRREHFASWRQLGHLLSSSKKHWGMRRQPK 426


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,647,230
Number of Sequences: 28952
Number of extensions: 206091
Number of successful extensions: 459
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)